Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   DBX28_RS02170 Genome accession   NZ_CP028959
Coordinates   454189..454554 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain IMP66     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 449189..459554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBX28_RS02140 (DBX28_02135) pyrR 449811..450323 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  DBX28_RS02145 (DBX28_02140) ruvX 450435..450869 (-) 435 WP_023098361.1 Holliday junction resolvase RuvX -
  DBX28_RS02150 (DBX28_02145) - 450869..451438 (-) 570 WP_034020581.1 YqgE/AlgH family protein -
  DBX28_RS02155 (DBX28_02150) - 451487..452380 (-) 894 WP_003162015.1 energy transducer TonB -
  DBX28_RS02160 (DBX28_02155) gshB 452527..453480 (-) 954 WP_003162014.1 glutathione synthase -
  DBX28_RS02165 (DBX28_02160) pilG 453735..454142 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  DBX28_RS02170 (DBX28_02165) pilH 454189..454554 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  DBX28_RS02175 (DBX28_02170) - 454605..455141 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  DBX28_RS02180 (DBX28_02175) pilJ 455226..457274 (+) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  DBX28_RS02185 (DBX28_02180) pilK 457335..458210 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=249432 DBX28_RS02170 WP_003084587.1 454189..454554(+) (pilH) [Pseudomonas aeruginosa strain IMP66]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=249432 DBX28_RS02170 WP_003084587.1 454189..454554(+) (pilH) [Pseudomonas aeruginosa strain IMP66]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364