Detailed information NTG0249415

Bioinformatically predicted

Overview

• Name: ssbB
• Type: Machinery gene
• Locus tag: CQJ30_RS17985
• Genome accession: NZ_CP023704
• Coordinates: 3749092..3749448 (-)
• Length: 118 a.a.
• NCBI ID: WP_041846678.1
• Uniprot ID: -
• Organism: Caldibacillus thermoamylovorans strain SSBM
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 3744092..3754448

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CQJ30_RS17955 (CQJ30_17880)	-	3744279..3744551 (-)	273	WP_108898914.1	hypothetical protein	-
CQJ30_RS17960 (CQJ30_17885)	-	3744571..3744822 (-)	252	WP_108898915.1	hypothetical protein	-
CQJ30_RS17965 (CQJ30_17890)	-	3744842..3745093 (-)	252	WP_108898916.1	hypothetical protein	-
CQJ30_RS17970 (CQJ30_17895)	-	3745113..3745376 (-)	264	WP_108898917.1	hypothetical protein	-
CQJ30_RS17975 (CQJ30_17900)	-	3745396..3746319 (-)	924	WP_108898918.1	Rpn family recombination-promoting nuclease/putative transposase	-
CQJ30_RS17980 (CQJ30_17905)	-	3746658..3747773 (-)	1116	WP_108898919.1	RNA-guided endonuclease TnpB family protein	-
CQJ30_RS19985	-	3748512..3748676 (-)	165	WP_156103279.1	hypothetical protein	-
CQJ30_RS17985 (CQJ30_17910)	ssbB	3749092..3749448 (-)	357	WP_041846678.1	single-stranded DNA-binding protein	Machinery gene
CQJ30_RS17990 (CQJ30_17915)	-	3749748..3750182 (+)	435	WP_108898920.1	YwpF family protein	-
CQJ30_RS17995 (CQJ30_17920)	-	3750229..3750588 (-)	360	WP_108898921.1	hypothetical protein	-
CQJ30_RS18000 (CQJ30_17925)	fabZ	3750830..3751252 (-)	423	WP_034773167.1	3-hydroxyacyl-ACP dehydratase FabZ	-
CQJ30_RS18005 (CQJ30_17930)	-	3751310..3751615 (-)	306	WP_244910460.1	DNA-directed RNA polymerase subunit beta	-
CQJ30_RS18010 (CQJ30_17935)	-	3751864..3752715 (-)	852	WP_309240457.1	flagellar hook-basal body protein	-
CQJ30_RS18015 (CQJ30_17940)	-	3752846..3753670 (-)	825	WP_041902725.1	flagellar hook-basal body protein	-

Sequence

Protein

• Length: 118 a.a.
• Molecular weight: 13120.83 Da
• Isoelectric Point: 8.4828

>NTDB_id=249415 CQJ30_RS17985 WP_041846678.1 3749092..3749448(-) (ssbB) [Caldibacillus thermoamylovorans strain SSBM]
MINQVTLVGRLTRDPELKLTQEGVALTNITLAVNRNYRSTSGSIETDFVQCTLWRRAAENTVQYCQKGSIIGIIGRIQTR
NYENSEGKRVYVTEVVADSVRFLGGRPAEDKEIAATNA

Nucleotide

• Length: 357 bp

>NTDB_id=249415 CQJ30_RS17985 WP_041846678.1 3749092..3749448(-) (ssbB) [Caldibacillus thermoamylovorans strain SSBM]
TTGATTAACCAGGTAACATTGGTAGGAAGACTGACGAGGGACCCGGAATTGAAATTAACGCAAGAAGGGGTTGCCTTAAC
AAATATTACGCTGGCAGTGAATCGAAATTATCGGTCCACGAGCGGCAGTATTGAAACAGATTTTGTTCAGTGCACACTCT
GGCGGCGAGCAGCAGAGAACACCGTACAATATTGCCAAAAGGGTTCGATCATTGGAATTATTGGCCGAATCCAGACGCGA
AATTACGAAAATAGTGAAGGGAAAAGGGTTTATGTTACGGAAGTTGTTGCTGATAGTGTCCGCTTTTTGGGAGGCAGGCC
GGCAGAGGACAAGGAAATCGCCGCAACAAATGCATAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB	Bacillus subtilis subsp. subtilis str. 168	62.385	92.373	0.576
ssbA	Bacillus subtilis subsp. subtilis str. 168	57.282	87.288	0.5
ssb	Latilactobacillus sakei subsp. sakei 23K	51.887	89.831	0.466
ssbB	Streptococcus sobrinus strain NIDR 6715-7	43.396	89.831	0.39
ssbB/cilA	Streptococcus pneumoniae TIGR4	42.453	89.831	0.381
ssbA	Streptococcus mutans UA159	42.453	89.831	0.381
ssbB/cilA	Streptococcus pneumoniae Rx1	41.509	89.831	0.373
ssbB/cilA	Streptococcus pneumoniae D39	41.509	89.831	0.373
ssbB/cilA	Streptococcus pneumoniae R6	41.509	89.831	0.373
ssbB/cilA	Streptococcus mitis SK321	41.509	89.831	0.373
ssbB/cilA	Streptococcus mitis NCTC 12261	40.566	89.831	0.364