Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   CQJ30_RS06645 Genome accession   NZ_CP023704
Coordinates   1360709..1362526 (+) Length   605 a.a.
NCBI ID   WP_041847711.1    Uniprot ID   -
Organism   Caldibacillus thermoamylovorans strain SSBM     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1355709..1367526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQJ30_RS06620 (CQJ30_06615) sspO 1355903..1356064 (+) 162 WP_034769119.1 small acid-soluble spore protein O -
  CQJ30_RS06625 (CQJ30_06620) trpS 1356119..1357105 (-) 987 WP_108897802.1 tryptophan--tRNA ligase -
  CQJ30_RS06630 (CQJ30_06625) spxA 1357833..1358228 (+) 396 WP_034769143.1 transcriptional regulator SpxA -
  CQJ30_RS06635 (CQJ30_06630) mecA 1358577..1359242 (+) 666 WP_041846033.1 adaptor protein MecA -
  CQJ30_RS06640 (CQJ30_06635) - 1359411..1360607 (+) 1197 WP_041847712.1 competence protein CoiA family protein -
  CQJ30_RS06645 (CQJ30_06640) pepF 1360709..1362526 (+) 1818 WP_041847711.1 oligoendopeptidase F Regulator
  CQJ30_RS06655 (CQJ30_06650) - 1363411..1364280 (-) 870 WP_244910508.1 ClpXP adapter SpxH family protein -
  CQJ30_RS06660 (CQJ30_06655) - 1364277..1364687 (-) 411 WP_034769151.1 globin -
  CQJ30_RS20515 (CQJ30_06660) - 1364939..1365550 (-) 612 WP_108897804.1 lytic transglycosylase domain-containing protein -
  CQJ30_RS06670 (CQJ30_06665) - 1365573..1366157 (-) 585 WP_192878707.1 CYTH domain-containing protein -
  CQJ30_RS06675 (CQJ30_06670) - 1366512..1367138 (+) 627 WP_041847579.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 70003.97 Da        Isoelectric Point: 4.9096

>NTDB_id=249389 CQJ30_RS06645 WP_041847711.1 1360709..1362526(+) (pepF) [Caldibacillus thermoamylovorans strain SSBM]
MSTEKAVKKLPARNEIPVKDTWALENIFATDEKWKEEFERIKAIIPKAFEFQGKLGENADVLYEALQYQDEVMMRLGKLY
TYAHMRYDQDTTNSFYQGMNDQARNLYTQAASAFSFVVPELLAIDENKIRQFLTEKEELKLYEHALEEINLQRPHVLSPE
VEAILAQSTEVTDAPSNTFGMLNNADLEFPSIVDENGEEVEITHGRYIRFLESADRRVRKDAFHALYETYGKFRNTFAST
LSGQVKRNNFYANVRKYKSAREAALSANNIPESVYDNLVETINKNLPLLHRYVALRKKVLGLDELHMYDLYTPLVKDVKM
EVTFEEAKDIVLKGLAPMGEEYLSVLKEGFANRWVDVHENKGKRSGAYSSGAYGTDPYILLNWQDNVNNLFTLAHEFGHS
VHSYYTRKYQPFPYGDYSIFVAEVASTCNENLLSEYLLKTLDDDRKRLYILNNYLETFRGTVFRQTMFAEFEHDIHIRSQ
KGEALTAELLTNIYYDLNKKYFGDDVVIDEEIGLEWARIPHFYYNYYVYQYATGLSASTALSKQILEEGEPAVERYIGYL
KSGSSDYPIEVLKKAGVDMTTAEPIENACKVFEEKLTEMERLLNK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=249389 CQJ30_RS06645 WP_041847711.1 1360709..1362526(+) (pepF) [Caldibacillus thermoamylovorans strain SSBM]
ATGTCTACAGAAAAAGCAGTAAAAAAGCTGCCGGCAAGAAATGAAATCCCGGTAAAGGATACATGGGCACTGGAAAATAT
TTTTGCAACAGACGAAAAATGGAAAGAGGAGTTTGAGCGGATTAAAGCGATAATTCCTAAAGCTTTTGAATTTCAAGGGA
AACTTGGTGAAAATGCTGACGTTTTATATGAAGCATTGCAATATCAAGATGAAGTGATGATGCGACTGGGGAAATTGTAT
ACATATGCCCATATGCGATATGATCAGGATACGACAAATTCTTTCTATCAAGGAATGAATGATCAAGCGAGAAATTTGTA
TACTCAGGCAGCAAGTGCTTTTTCCTTCGTTGTCCCCGAATTACTGGCGATTGATGAGAATAAAATCCGGCAGTTTTTAA
CCGAAAAAGAAGAATTAAAGTTATATGAGCATGCTTTGGAAGAAATTAATTTGCAACGTCCGCATGTATTGTCACCTGAA
GTAGAAGCGATTTTAGCCCAAAGTACAGAAGTGACGGATGCGCCGAGTAATACATTCGGCATGCTAAATAACGCAGACTT
GGAGTTTCCGTCTATTGTGGATGAAAACGGAGAAGAAGTCGAAATAACGCACGGCCGTTATATTCGCTTTTTAGAAAGTG
CGGATCGCCGTGTGCGAAAAGATGCGTTTCATGCTTTATATGAAACGTATGGGAAATTCCGAAATACGTTTGCGAGTACA
CTAAGCGGACAAGTAAAACGCAATAATTTTTATGCTAATGTCCGTAAATACAAATCGGCACGGGAAGCCGCACTATCCGC
CAACAATATTCCGGAGTCGGTATATGATAATTTAGTGGAAACAATCAATAAAAACTTGCCGCTTCTACACCGTTATGTCG
CATTACGGAAAAAGGTGCTTGGACTTGATGAATTGCATATGTATGATTTGTATACACCGCTTGTTAAAGATGTCAAAATG
GAAGTGACCTTTGAAGAGGCAAAAGATATCGTCTTAAAAGGATTGGCTCCAATGGGGGAAGAATATCTTTCCGTTTTAAA
AGAAGGGTTTGCCAATCGCTGGGTAGATGTCCATGAAAATAAAGGAAAAAGAAGCGGGGCTTACTCATCCGGAGCGTATG
GAACCGATCCGTATATATTGTTAAACTGGCAAGACAATGTCAATAATTTGTTTACCCTTGCCCATGAATTTGGTCATTCG
GTACATAGTTACTATACAAGGAAATACCAACCATTTCCTTATGGCGATTATTCGATTTTTGTTGCCGAAGTTGCCTCCAC
TTGTAATGAAAATTTATTAAGTGAGTATTTGTTAAAAACATTGGACGATGATAGAAAACGGCTGTACATTTTGAATAATT
ATTTGGAAACATTCCGTGGCACGGTATTCCGGCAGACCATGTTTGCTGAATTTGAACATGATATTCACATTCGTTCCCAA
AAAGGGGAAGCATTGACGGCAGAGTTATTGACAAATATTTATTATGATTTGAATAAAAAATATTTTGGTGATGATGTTGT
TATTGACGAGGAAATTGGCTTAGAATGGGCGAGAATTCCGCATTTCTACTACAACTATTATGTTTACCAATATGCAACGG
GCTTAAGTGCATCAACGGCATTGAGTAAACAAATTTTAGAAGAAGGAGAGCCTGCCGTAGAACGATATATCGGTTATTTG
AAATCCGGAAGCTCGGATTATCCAATCGAAGTGTTGAAAAAAGCCGGGGTGGATATGACAACGGCGGAACCAATCGAAAA
TGCCTGCAAAGTTTTTGAAGAGAAATTGACTGAAATGGAACGACTTTTAAATAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.433

98.017

0.504

Multiple sequence alignment