Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   FORC83_RS03110 Genome accession   NZ_CP028933
Coordinates   590059..590442 (+) Length   127 a.a.
NCBI ID   WP_002871352.1    Uniprot ID   -
Organism   Campylobacter jejuni strain FORC_083     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 585059..595442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC83_RS03090 (FORC83_0610) - 585138..587072 (-) 1935 WP_002870085.1 ribonuclease R family protein -
  FORC83_RS03095 (FORC83_0611) ilvC 587191..588213 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  FORC83_RS03100 (FORC83_0612) - 588217..589299 (+) 1083 WP_002904503.1 divergent polysaccharide deacetylase family protein -
  FORC83_RS03105 (FORC83_0613) dprA 589289..590062 (+) 774 WP_002888477.1 DNA-processing protein DprA Machinery gene
  FORC83_RS03110 (FORC83_0614) dprB 590059..590442 (+) 384 WP_002871352.1 Holliday junction resolvase RuvX Machinery gene
  FORC83_RS03115 (FORC83_0615) - 590471..591310 (+) 840 WP_079757594.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  FORC83_RS03120 (FORC83_0616) msrA 591486..591983 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  FORC83_RS03125 (FORC83_0617) ppa 592024..592542 (-) 519 WP_002855031.1 inorganic diphosphatase -
  FORC83_RS03130 (FORC83_0618) adk 592552..593130 (-) 579 WP_002855137.1 adenylate kinase -
  FORC83_RS03135 (FORC83_0619) aspS 593127..594878 (-) 1752 WP_013463448.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14146.63 Da        Isoelectric Point: 9.0848

>NTDB_id=249389 FORC83_RS03110 WP_002871352.1 590059..590442(+) (dprB) [Campylobacter jejuni strain FORC_083]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=249389 FORC83_RS03110 WP_002871352.1 590059..590442(+) (dprB) [Campylobacter jejuni strain FORC_083]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGAATACGGTGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

45.669

100

0.457

Multiple sequence alignment