Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CQJ30_RS06110 Genome accession   NZ_CP023704
Coordinates   1250035..1250982 (+) Length   315 a.a.
NCBI ID   WP_034768949.1    Uniprot ID   A0A090ITF9
Organism   Caldibacillus thermoamylovorans strain SSBM     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1245035..1255982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQJ30_RS06095 (CQJ30_06090) argS 1245650..1247356 (+) 1707 WP_041902083.1 arginine--tRNA ligase -
  CQJ30_RS06100 (CQJ30_06095) - 1247570..1248604 (-) 1035 WP_108897759.1 NADH:flavin oxidoreductase/NADH oxidase -
  CQJ30_RS06105 (CQJ30_06100) - 1248979..1249728 (+) 750 WP_108897760.1 EAL domain-containing protein -
  CQJ30_RS06110 (CQJ30_06105) ceuB 1250035..1250982 (+) 948 WP_034768949.1 ABC transporter permease Machinery gene
  CQJ30_RS06115 (CQJ30_06110) - 1250979..1251929 (+) 951 WP_041845983.1 iron chelate uptake ABC transporter family permease subunit -
  CQJ30_RS06120 (CQJ30_06115) - 1251923..1252681 (+) 759 WP_108897761.1 ABC transporter ATP-binding protein -
  CQJ30_RS06125 (CQJ30_06120) - 1252881..1253846 (+) 966 WP_095141397.1 siderophore ABC transporter substrate-binding protein -
  CQJ30_RS06130 (CQJ30_06125) - 1254116..1255177 (+) 1062 WP_041845985.1 C45 family peptidase -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34552.73 Da        Isoelectric Point: 10.0987

>NTDB_id=249384 CQJ30_RS06110 WP_034768949.1 1250035..1250982(+) (ceuB) [Caldibacillus thermoamylovorans strain SSBM]
MKKRYLLLVLIILSLISLFIGVSDISVMDIFHLTDKQWQILVVSRIPRLISIIVSGASLSIAGLIMQSLSRNKFVSPTTA
GTMDFARLGILVAMIVFAGAGSLSKMFVAFVFALAGTFLFMKILERIKFKDAIFIPLVGLMLGNIVSSIATFFAYQNDLI
QNISSWLIGDFSIILKGNYELIFISVPLLFIAYLYANKFTIAGMGEDFSKGLGLNYRQVVNLGLIIVALITSSVVLTVGV
IPFLGLIIPNVVSIYRGDHLKNSLAPTAILGAIFVLFCDILGRVIIYPYEIPINLTVGVIGSAIFIYLLLRRQAQ

Nucleotide


Download         Length: 948 bp        

>NTDB_id=249384 CQJ30_RS06110 WP_034768949.1 1250035..1250982(+) (ceuB) [Caldibacillus thermoamylovorans strain SSBM]
ATGAAGAAGAGATACCTACTCCTAGTACTGATTATCCTTTCACTTATATCCCTCTTTATCGGGGTATCAGATATTTCAGT
GATGGATATCTTTCATTTAACAGATAAACAATGGCAAATATTAGTAGTCAGTAGAATTCCAAGGCTAATCAGTATTATTG
TCTCGGGGGCATCGCTGAGTATTGCCGGGCTGATTATGCAAAGCTTAAGTCGCAATAAATTCGTCTCACCAACAACAGCG
GGTACGATGGATTTTGCCCGACTGGGAATTCTCGTTGCTATGATTGTTTTTGCCGGTGCCGGTTCACTTAGCAAAATGTT
TGTTGCTTTTGTATTCGCTTTAGCAGGGACCTTCCTGTTTATGAAAATCTTAGAAAGAATTAAATTTAAGGATGCGATAT
TTATCCCGCTTGTCGGGTTAATGCTAGGAAATATTGTCAGTTCAATTGCAACATTTTTTGCCTATCAAAATGATTTAATT
CAAAATATCTCATCATGGTTAATTGGTGATTTTTCCATCATTTTAAAAGGAAATTACGAATTAATTTTTATCAGTGTGCC
ACTCTTGTTTATTGCGTATCTTTATGCCAACAAATTTACAATTGCCGGAATGGGGGAGGATTTTTCAAAAGGTCTTGGTT
TAAACTACCGTCAAGTAGTTAATCTCGGTTTAATCATCGTTGCTCTTATTACATCATCGGTTGTCTTAACCGTTGGGGTA
ATCCCATTTTTGGGCCTTATTATTCCAAATGTTGTTTCGATTTATCGAGGCGATCATTTGAAGAATAGTTTAGCCCCAAC
AGCAATTCTTGGTGCCATTTTTGTTCTGTTTTGCGATATTCTCGGTCGAGTGATTATTTATCCGTATGAAATTCCAATCA
ATTTGACAGTAGGTGTTATTGGCAGTGCAATTTTTATTTACTTATTATTGAGGAGACAGGCACAATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A090ITF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.341

98.73

0.537

Multiple sequence alignment