Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   C5B40_RS24810 Genome accession   NZ_CP028917
Coordinates   5177955..5178569 (+) Length   204 a.a.
NCBI ID   WP_003091196.1    Uniprot ID   Q02PH1
Organism   Pseudomonas aeruginosa strain JB2     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5172955..5183569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5B40_RS24790 - 5174398..5175027 (+) 630 WP_003091190.1 CsiV family protein -
  C5B40_RS24795 - 5175073..5175810 (-) 738 WP_003091193.1 S-methyl-5'-thioinosine phosphorylase -
  C5B40_RS24800 nagZ 5175822..5176820 (-) 999 WP_024947861.1 beta-N-acetylhexosaminidase -
  C5B40_RS24805 psrA 5177022..5177723 (-) 702 WP_003091195.1 transcriptional regulator PsrA -
  C5B40_RS24810 dinR/lexA 5177955..5178569 (+) 615 WP_003091196.1 transcriptional repressor LexA Regulator
  C5B40_RS24815 sulA 5178581..5179066 (+) 486 WP_003091197.1 SOS-induced cell division inhibitor SulA -
  C5B40_RS24820 - 5179088..5179321 (-) 234 WP_003109483.1 hypothetical protein -
  C5B40_RS24825 - 5179527..5180045 (-) 519 WP_003091199.1 DUF6586 family protein -
  C5B40_RS24830 topA 5180152..5182752 (-) 2601 WP_024947862.1 type I DNA topoisomerase -
  C5B40_RS24835 - 5182843..5183106 (-) 264 WP_003109484.1 DUF1653 domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22505.95 Da        Isoelectric Point: 6.4989

>NTDB_id=249358 C5B40_RS24810 WP_003091196.1 5177955..5178569(+) (dinR/lexA) [Pseudomonas aeruginosa strain JB2]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=249358 C5B40_RS24810 WP_003091196.1 5177955..5178569(+) (dinR/lexA) [Pseudomonas aeruginosa strain JB2]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAGGCGCTGGCACGCAAGG
GCGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAACCGCATGCCGCCAACGACGATGAG
GGCCTGCCGGTGATCGGACGGGTCGCCGCCGGCGCACCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGGATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATTCTCGACG
GCGACCTGCTGGCCGTCCACGTCACCCGCGAAGCGCGCAACGGCCAGGTGGTGGTCGCGCGGATCGGCGAGGAGGTCACG
GTGAAACGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGACGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(83-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02PH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387