Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   C5B40_RS24565 Genome accession   NZ_CP028917
Coordinates   5129739..5130095 (-) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain JB2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5124739..5135095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5B40_RS24540 - 5125122..5125754 (-) 633 WP_003091112.1 DUF4823 domain-containing protein -
  C5B40_RS24545 - 5125819..5126715 (-) 897 WP_024947848.1 radical SAM protein -
  C5B40_RS24550 - 5126865..5127503 (-) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  C5B40_RS24555 - 5127589..5128722 (+) 1134 WP_023875121.1 aminotransferase class V-fold PLP-dependent enzyme -
  C5B40_RS24560 - 5128948..5129724 (-) 777 WP_023875120.1 TatD family hydrolase -
  C5B40_RS24565 pilZ 5129739..5130095 (-) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  C5B40_RS24570 - 5130129..5131115 (-) 987 WP_023875119.1 DNA polymerase III subunit delta' -
  C5B40_RS24575 tmk 5131108..5131740 (-) 633 WP_003122486.1 dTMP kinase -
  C5B40_RS24580 mltG 5131769..5132818 (-) 1050 WP_003130717.1 endolytic transglycosylase MltG -
  C5B40_RS24585 pabC 5132824..5133639 (-) 816 WP_003113994.1 aminodeoxychorismate lyase -
  C5B40_RS24590 fabF 5133639..5134883 (-) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=249355 C5B40_RS24565 WP_003091119.1 5129739..5130095(-) (pilZ) [Pseudomonas aeruginosa strain JB2]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=249355 C5B40_RS24565 WP_003091119.1 5129739..5130095(-) (pilZ) [Pseudomonas aeruginosa strain JB2]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTTTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTTGGCGACGAGGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCTCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449