Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   C5B40_RS15100 Genome accession   NZ_CP028917
Coordinates   3130810..3131406 (+) Length   198 a.a.
NCBI ID   WP_024947813.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain JB2     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3125810..3136406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5B40_RS15075 - 3126726..3127103 (+) 378 WP_003083354.1 hypothetical protein -
  C5B40_RS15085 - 3127357..3128223 (-) 867 WP_024947815.1 substrate-binding periplasmic protein -
  C5B40_RS15090 dnaX 3128260..3130359 (+) 2100 WP_108565226.1 DNA polymerase III subunit gamma/tau -
  C5B40_RS15095 - 3130405..3130731 (+) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  C5B40_RS15100 recR 3130810..3131406 (+) 597 WP_024947813.1 recombination mediator RecR Machinery gene
  C5B40_RS15105 - 3131529..3132677 (+) 1149 WP_003103930.1 acyl-CoA dehydrogenase family protein -
  C5B40_RS15110 - 3132690..3133229 (-) 540 WP_024947812.1 CbrC family protein -
  C5B40_RS15115 - 3133303..3134190 (-) 888 WP_024947811.1 SDR family NAD(P)-dependent oxidoreductase -
  C5B40_RS15120 - 3134187..3135770 (-) 1584 WP_003121915.1 flavin-containing monooxygenase -
  C5B40_RS33435 - 3135893..3136012 (+) 120 Protein_2920 TetR family transcriptional regulator -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21231.51 Da        Isoelectric Point: 6.3332

>NTDB_id=249336 C5B40_RS15100 WP_024947813.1 3130810..3131406(+) (recR) [Pseudomonas aeruginosa strain JB2]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRRCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLT
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=249336 C5B40_RS15100 WP_024947813.1 3130810..3131406(+) (recR) [Pseudomonas aeruginosa strain JB2]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAATCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCGGTGCCGTACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGACC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAGCTGGTCGATGGCGGCACCCT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48