Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   C5B40_RS02540 Genome accession   NZ_CP028917
Coordinates   534541..535266 (-) Length   241 a.a.
NCBI ID   WP_024947120.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain JB2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 529541..540266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5B40_RS02515 - 530013..530528 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  C5B40_RS02520 rarD 531218..532114 (-) 897 WP_003103301.1 EamA family transporter RarD -
  C5B40_RS02525 - 532317..533291 (-) 975 WP_023107657.1 serine/threonine protein kinase -
  C5B40_RS02530 - 533353..534111 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  C5B40_RS02535 - 534179..534499 (-) 321 WP_003129064.1 YfiM family lipoprotein -
  C5B40_RS02540 comF 534541..535266 (-) 726 WP_024947120.1 ComF family protein Machinery gene
  C5B40_RS02545 - 535405..535698 (-) 294 WP_003113255.1 hypothetical protein -
  C5B40_RS02550 - 535752..536678 (-) 927 WP_078463939.1 LysR family transcriptional regulator -
  C5B40_RS02555 - 536796..537554 (+) 759 WP_003111232.1 5-oxoprolinase subunit PxpA -
  C5B40_RS02560 - 537631..537879 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  C5B40_RS02565 - 537890..539266 (+) 1377 WP_003084815.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  C5B40_RS02570 - 539268..540146 (+) 879 WP_003084817.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27118.68 Da        Isoelectric Point: 11.0261

>NTDB_id=249290 C5B40_RS02540 WP_024947120.1 534541..535266(-) (comF) [Pseudomonas aeruginosa strain JB2]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAVWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDARVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=249290 C5B40_RS02540 WP_024947120.1 534541..535266(-) (comF) [Pseudomonas aeruginosa strain JB2]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCACTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGTCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGGCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCCGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGAGGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTAACCACCGGGGCCACCG
CCGAGTGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(141-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382
  comFC Legionella pneumophila str. Paris

37.607

97.095

0.365

Multiple sequence alignment