Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   C5B40_RS02115 Genome accession   NZ_CP028917
Coordinates   436814..437179 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain JB2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 431814..442179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5B40_RS02085 pyrR 432435..432947 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  C5B40_RS02090 ruvX 433059..433493 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  C5B40_RS02095 - 433493..434062 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  C5B40_RS02100 - 434111..435004 (-) 894 WP_003084580.1 TonB family protein -
  C5B40_RS02105 gshB 435151..436104 (-) 954 WP_003110019.1 glutathione synthase -
  C5B40_RS02110 pilG 436360..436767 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  C5B40_RS02115 pilH 436814..437179 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  C5B40_RS02120 - 437230..437766 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  C5B40_RS02125 pilJ 437851..439899 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  C5B40_RS02130 pilK 439960..440835 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=249287 C5B40_RS02115 WP_003084587.1 436814..437179(+) (pilH) [Pseudomonas aeruginosa strain JB2]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=249287 C5B40_RS02115 WP_003084587.1 436814..437179(+) (pilH) [Pseudomonas aeruginosa strain JB2]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTTCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGATCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCGCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364