Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   CQB05_RS16345 Genome accession   NZ_CP023687
Coordinates   3574462..3574872 (-) Length   136 a.a.
NCBI ID   WP_011794057.1    Uniprot ID   A1TKL1
Organism   Paracidovorax citrulli strain KACC17005     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3569462..3579872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQB05_RS16330 (CQB05_16330) - 3571285..3573522 (-) 2238 WP_011794060.1 methyl-accepting chemotaxis protein -
  CQB05_RS16335 (CQB05_16335) - 3573553..3574080 (-) 528 WP_011794059.1 chemotaxis protein CheW -
  CQB05_RS16340 (CQB05_16340) - 3574097..3574462 (-) 366 WP_011794058.1 response regulator -
  CQB05_RS16345 (CQB05_16345) pilG 3574462..3574872 (-) 411 WP_011794057.1 response regulator Regulator
  CQB05_RS16350 (CQB05_16350) - 3574917..3575090 (-) 174 WP_011794056.1 rubredoxin -
  CQB05_RS16355 (CQB05_16355) - 3575185..3576141 (+) 957 WP_011794055.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  CQB05_RS16360 (CQB05_16360) hemL 3576125..3577438 (+) 1314 WP_011794054.1 glutamate-1-semialdehyde 2,1-aminomutase -
  CQB05_RS16365 (CQB05_16365) - 3577598..3578620 (+) 1023 WP_116212574.1 pectate lyase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15067.40 Da        Isoelectric Point: 8.2578

>NTDB_id=249247 CQB05_RS16345 WP_011794057.1 3574462..3574872(-) (pilG) [Paracidovorax citrulli strain KACC17005]
MTKLTQTSGATFKVLVVDDSNTIRRSAEIFLKQGGHEVLLADDGFDALAKVNDYQPQLIFCDILMPKLDGYQTCAIIKRN
ARFADTPVVMLSSKDGVFDKARGRMVGCQEYLTKPFTKDQLLKAVQQFGNAQQGAM

Nucleotide


Download         Length: 411 bp        

>NTDB_id=249247 CQB05_RS16345 WP_011794057.1 3574462..3574872(-) (pilG) [Paracidovorax citrulli strain KACC17005]
GTGACGAAATTGACCCAGACCAGTGGCGCAACCTTCAAGGTGCTTGTCGTGGACGACAGCAACACCATCCGCCGGAGTGC
CGAGATCTTTCTCAAGCAGGGAGGCCACGAGGTCCTGCTGGCGGACGATGGCTTCGACGCCCTGGCGAAGGTCAATGATT
ATCAACCCCAGTTGATTTTCTGCGACATCCTGATGCCGAAACTGGACGGCTACCAGACCTGCGCCATCATCAAGCGCAAT
GCGCGCTTCGCGGACACGCCCGTTGTCATGCTCTCGTCAAAAGACGGGGTATTCGACAAGGCGCGCGGCCGCATGGTGGG
CTGCCAGGAATATCTCACCAAACCATTTACCAAAGACCAGCTGCTGAAAGCGGTTCAGCAGTTCGGTAATGCCCAACAAG
GAGCGATGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1TKL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

57.265

86.029

0.493

Multiple sequence alignment