Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | CP957_RS17340 | Genome accession | NZ_CP023673 |
| Coordinates | 3130420..3131049 (-) | Length | 209 a.a. |
| NCBI ID | WP_032186268.1 | Uniprot ID | - |
| Organism | Escherichia coli strain SMN013SH2 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3105476..3142223 | 3130420..3131049 | within | 0 |
Gene organization within MGE regions
Location: 3105476..3142223
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CP957_RS17165 (CP957_17020) | - | 3107082..3107855 (-) | 774 | WP_062881813.1 | alpha/beta hydrolase | - |
| CP957_RS17170 (CP957_17025) | hokD | 3108460..3108615 (+) | 156 | WP_000813263.1 | type I toxin-antitoxin system toxin HokD | - |
| CP957_RS17175 (CP957_17030) | - | 3108783..3109061 (+) | 279 | WP_074433979.1 | hypothetical protein | - |
| CP957_RS17180 (CP957_17035) | - | 3109063..3110112 (+) | 1050 | WP_001265133.1 | DUF968 domain-containing protein | - |
| CP957_RS17185 (CP957_17040) | - | 3110125..3110496 (+) | 372 | WP_001217436.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CP957_RS17190 (CP957_17045) | - | 3110486..3110857 (+) | 372 | WP_000090265.1 | antiterminator Q family protein | - |
| CP957_RS17195 (CP957_17050) | - | 3111009..3111827 (+) | 819 | WP_000265267.1 | CPBP family intramembrane glutamic endopeptidase | - |
| CP957_RS17200 (CP957_17055) | - | 3112114..3112311 (+) | 198 | WP_000917737.1 | hypothetical protein | - |
| CP957_RS29410 | - | 3112446..3112871 (+) | 426 | WP_176465538.1 | hypothetical protein | - |
| CP957_RS17210 (CP957_17065) | - | 3112858..3112953 (-) | 96 | Protein_3185 | Rha family transcriptional regulator | - |
| CP957_RS17215 (CP957_17070) | - | 3112937..3113209 (-) | 273 | WP_000887453.1 | YdaS family helix-turn-helix protein | - |
| CP957_RS17220 (CP957_17075) | - | 3113318..3113719 (+) | 402 | WP_000986592.1 | helix-turn-helix domain-containing protein | - |
| CP957_RS17225 (CP957_17080) | - | 3113747..3113938 (+) | 192 | WP_000536233.1 | hypothetical protein | - |
| CP957_RS17230 (CP957_17085) | - | 3113938..3114225 (+) | 288 | WP_001303876.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CP957_RS17235 (CP957_17095) | ydfA | 3114502..3114657 (+) | 156 | WP_000379575.1 | DUF1391 family protein | - |
| CP957_RS30225 (CP957_17100) | ydfB | 3114659..3114787 (+) | 129 | WP_000344963.1 | protein YdfB | - |
| CP957_RS17245 (CP957_17105) | - | 3114799..3115188 (+) | 390 | WP_032205089.1 | hypothetical protein | - |
| CP957_RS17250 (CP957_17110) | - | 3115375..3115560 (-) | 186 | WP_032205087.1 | hypothetical protein | - |
| CP957_RS17260 (CP957_17120) | dicB | 3116134..3116322 (+) | 189 | WP_000413705.1 | cell division inhibition protein DicB | - |
| CP957_RS17265 (CP957_17125) | - | 3116319..3116510 (+) | 192 | WP_001098307.1 | DUF1482 family protein | - |
| CP957_RS17270 (CP957_17130) | - | 3116604..3119054 (+) | 2451 | WP_009448824.1 | exonuclease | - |
| CP957_RS17275 (CP957_17135) | - | 3119122..3119364 (+) | 243 | WP_000273151.1 | DUF4224 domain-containing protein | - |
| CP957_RS17280 (CP957_17140) | - | 3119342..3120361 (+) | 1020 | WP_001299351.1 | tyrosine-type recombinase/integrase | - |
| CP957_RS17285 (CP957_17145) | yccA | 3120769..3121428 (+) | 660 | WP_062882278.1 | FtsH protease modulator YccA | - |
| CP957_RS17290 (CP957_17150) | tusE | 3121519..3121848 (+) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
| CP957_RS17295 (CP957_17155) | yccX | 3121845..3122123 (-) | 279 | WP_000048252.1 | acylphosphatase | - |
| CP957_RS17300 (CP957_17160) | rlmI | 3122218..3123408 (+) | 1191 | WP_062882280.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| CP957_RS17305 (CP957_17165) | hspQ | 3123466..3123783 (+) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| CP957_RS17310 (CP957_17170) | yccU | 3123828..3124241 (-) | 414 | WP_001343235.1 | CoA-binding protein | - |
| CP957_RS17315 (CP957_17175) | yccT | 3124414..3125076 (+) | 663 | WP_060616790.1 | DUF2057 family protein | - |
| CP957_RS17320 (CP957_17180) | mgsA | 3125172..3125630 (+) | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| CP957_RS17325 (CP957_17185) | helD | 3125662..3127716 (-) | 2055 | WP_000420537.1 | DNA helicase IV | - |
| CP957_RS17330 (CP957_17190) | yccF | 3127839..3128285 (+) | 447 | WP_062882281.1 | YccF domain-containing protein | - |
| CP957_RS17335 (CP957_17195) | yccS | 3128295..3130457 (+) | 2163 | WP_074434046.1 | YccS family putative transporter | - |
| CP957_RS17340 (CP957_17200) | sxy/tfoX | 3130420..3131049 (-) | 630 | WP_032186268.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| CP957_RS17345 (CP957_17205) | sulA | 3131268..3131777 (+) | 510 | WP_000288710.1 | SOS-induced cell division inhibitor SulA | - |
| CP957_RS17355 (CP957_17215) | ompA | 3132134..3133174 (+) | 1041 | WP_062882317.1 | porin OmpA | - |
| CP957_RS17360 (CP957_17220) | matP | 3133250..3133702 (-) | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| CP957_RS17365 (CP957_17225) | ycbZ | 3133888..3135648 (+) | 1761 | WP_062882282.1 | Lon protease family protein | - |
| CP957_RS17370 (CP957_17230) | fabA | 3135717..3136235 (+) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| CP957_RS17375 (CP957_17235) | rmf | 3136305..3136472 (-) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| CP957_RS17380 (CP957_17240) | pqiC | 3136728..3137291 (-) | 564 | WP_000759129.1 | membrane integrity-associated transporter subunit PqiC | - |
| CP957_RS17385 (CP957_17245) | pqiB | 3137288..3138928 (-) | 1641 | WP_000445561.1 | intermembrane transport protein PqiB | - |
| CP957_RS17390 (CP957_17250) | pqiA | 3138933..3140186 (-) | 1254 | WP_062882283.1 | membrane integrity-associated transporter subunit PqiA | - |
| CP957_RS17395 (CP957_17255) | uup | 3140316..3142223 (-) | 1908 | WP_062882284.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24177.04 Da Isoelectric Point: 8.9883
>NTDB_id=249212 CP957_RS17340 WP_032186268.1 3130420..3131049(-) (sxy/tfoX) [Escherichia coli strain SMN013SH2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLWQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLWQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=249212 CP957_RS17340 WP_032186268.1 3130420..3131049(-) (sxy/tfoX) [Escherichia coli strain SMN013SH2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGTGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGTGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
99.522 |
100 |
0.995 |