Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CJ12661_RS05490 Genome accession   NZ_CP028911
Coordinates   1073006..1073956 (+) Length   316 a.a.
NCBI ID   WP_002853794.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC 12661     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1068006..1078956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ12661_RS05465 (CJ12661_1075) - 1068071..1068958 (-) 888 WP_052803913.1 glycosyltransferase family 2 protein -
  CJ12661_RS05470 (CJ12661_1076) - 1068951..1070159 (-) 1209 WP_044306107.1 glycosyltransferase family 2 protein -
  CJ12661_RS08395 - 1070237..1070644 (-) 408 WP_052500184.1 hypothetical protein -
  CJ12661_RS08400 - 1070674..1071204 (-) 531 WP_052500185.1 glycosyltransferase family 2 protein -
  CJ12661_RS05480 (CJ12661_1078) - 1071197..1072084 (-) 888 WP_052803914.1 glycosyltransferase -
  CJ12661_RS05485 (CJ12661_1079) waaV 1072138..1072947 (-) 810 WP_044306108.1 glycosyltransferase family 2 protein -
  CJ12661_RS05490 (CJ12661_1080) waaF 1073006..1073956 (+) 951 WP_002853794.1 glycosyltransferase family 9 protein Regulator
  CJ12661_RS05495 (CJ12661_1081) - 1073942..1074706 (-) 765 WP_044306109.1 glycosyltransferase family 25 protein -
  CJ12661_RS05500 (CJ12661_1082) gmhA 1074706..1075266 (-) 561 WP_023890815.1 D-sedoheptulose 7-phosphate isomerase -
  CJ12661_RS05505 (CJ12661_1083) rfaE1 1075263..1076648 (-) 1386 WP_044306110.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  CJ12661_RS05510 (CJ12661_1084) rfaD 1076641..1077594 (-) 954 WP_044306111.1 ADP-glyceromanno-heptose 6-epimerase -
  CJ12661_RS05515 (CJ12661_1085) gmhB 1077595..1078155 (-) 561 WP_002853963.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  CJ12661_RS05520 (CJ12661_1086) - 1078237..1078539 (+) 303 WP_002852762.1 cytochrome c -
  CJ12661_RS05525 (CJ12661_1087) ccoS 1078562..1078768 (-) 207 WP_002877126.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36225.73 Da        Isoelectric Point: 10.2421

>NTDB_id=249210 CJ12661_RS05490 WP_002853794.1 1073006..1073956(+) (waaF) [Campylobacter jejuni strain NCTC 12661]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDVSYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENATLVHLDLACMPCMQKTCPLKHHKCMKDLKPEVIVKAIQNLTNI

Nucleotide


Download         Length: 951 bp        

>NTDB_id=249210 CJ12661_RS05490 WP_002853794.1 1073006..1073956(+) (waaF) [Campylobacter jejuni strain NCTC 12661]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCGCCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCTCAGTTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGCAAAATCGATTTTAGCTTTGCT
TTTAGGTCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAGCAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGTGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATTGCTTTTTGTGATCTTTTCATCACAAACGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAACATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTGAAGTGATTGTAAAAGCGATTCAAAATTTAACTAATATCTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

93.61

99.051

0.927