Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CJ12661_RS05145 Genome accession   NZ_CP028911
Coordinates   1003995..1004543 (+) Length   182 a.a.
NCBI ID   WP_044306076.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC 12661     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 998995..1009543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ12661_RS05120 (CJ12661_1006) rseP 999167..1000273 (+) 1107 WP_044306072.1 RIP metalloprotease RseP -
  CJ12661_RS05125 (CJ12661_1007) - 1000266..1001126 (+) 861 WP_044306073.1 VirK family antimicrobial peptide resistance protein -
  CJ12661_RS05130 (CJ12661_1008) - 1001119..1002120 (-) 1002 WP_044306074.1 sugar phosphate isomerase/epimerase family protein -
  CJ12661_RS05135 (CJ12661_1009) - 1002117..1003391 (-) 1275 WP_044306075.1 MFS transporter -
  CJ12661_RS05140 (CJ12661_1010) rpsF 1003609..1003986 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  CJ12661_RS05145 (CJ12661_1011) ssb 1003995..1004543 (+) 549 WP_044306076.1 single-stranded DNA-binding protein Machinery gene
  CJ12661_RS05150 (CJ12661_1012) rpsR 1004554..1004814 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  CJ12661_RS05155 (CJ12661_1013) lon 1004875..1007250 (-) 2376 WP_002866098.1 endopeptidase La -
  CJ12661_RS05160 (CJ12661_1014) - 1007267..1007914 (-) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  CJ12661_RS05165 (CJ12661_1015) fliW 1008075..1008464 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  CJ12661_RS05170 (CJ12661_1016) proC 1008464..1009195 (+) 732 WP_044306077.1 pyrroline-5-carboxylate reductase Machinery gene
  CJ12661_RS05175 (CJ12661_1017) ctsT 1009192..1009494 (+) 303 WP_002855822.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20595.51 Da        Isoelectric Point: 5.0431

>NTDB_id=249205 CJ12661_RS05145 WP_044306076.1 1003995..1004543(+) (ssb) [Campylobacter jejuni strain NCTC 12661]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSSTPQQGGIGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=249205 CJ12661_RS05145 WP_044306076.1 1003995..1004543(+) (ssb) [Campylobacter jejuni strain NCTC 12661]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGCGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGTT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAGTGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGAAATTC
CAGCACTCCACAACAAGGTGGAATTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.378

100

0.39

Multiple sequence alignment