Detailed information NTG0249164

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: CJ12660_RS05920
• Genome accession: NZ_CP028910
• Coordinates: 1122221..1123180 (+)
• Length: 319 a.a.
• NCBI ID: WP_002875425.1
• Uniprot ID: Q0P9A8
• Organism: Campylobacter jejuni strain NCTC 12660
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1117221..1128180

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CJ12660_RS05900 (CJ12660_1138)	neuC	1117783..1118898 (+)	1116	WP_002858400.1	UDP-N-acetylglucosamine 2-epimerase	-
CJ12660_RS09110	-	1118895..1119809 (+)	915	Protein_1141	beta-1,4-N-acetylgalactosaminyltransferase	-
CJ12660_RS09115	-	1119843..1120505 (+)	663	WP_002881429.1	N-acylneuraminate cytidylyltransferase	-
CJ12660_RS05910 (CJ12660_1140)	-	1120500..1121354 (-)	855	WP_052806020.1	hypothetical protein	-
CJ12660_RS05915 (CJ12660_1141)	waaV	1121338..1122162 (-)	825	WP_002858096.1	glycosyltransferase family 2 protein	-
CJ12660_RS05920 (CJ12660_1142)	waaF	1122221..1123180 (+)	960	WP_002875425.1	lipopolysaccharide heptosyltransferase II	Regulator
CJ12660_RS05925 (CJ12660_1143)	gmhA	1123161..1123721 (-)	561	WP_002858021.1	D-sedoheptulose 7-phosphate isomerase	-
CJ12660_RS05930 (CJ12660_1144)	rfaE1	1123718..1125103 (-)	1386	WP_052778309.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
CJ12660_RS05935 (CJ12660_1145)	rfaD	1125096..1126049 (-)	954	WP_002852832.1	ADP-glyceromanno-heptose 6-epimerase	-
CJ12660_RS05940 (CJ12660_1146)	gmhB	1126050..1126610 (-)	561	WP_002878815.1	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
CJ12660_RS05945 (CJ12660_1147)	-	1126692..1126994 (+)	303	WP_002852762.1	cytochrome c	-
CJ12660_RS05950 (CJ12660_1148)	ccoS	1127017..1127223 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36734.30 Da
• Isoelectric Point: 10.2412

>NTDB_id=249164 CJ12660_RS05920 WP_002875425.1 1122221..1123180(+) (waaF) [Campylobacter jejuni strain NCTC 12660]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL

Nucleotide

• Length: 960 bp

>NTDB_id=249164 CJ12660_RS05920 WP_002875425.1 1122221..1123180(+) (waaF) [Campylobacter jejuni strain NCTC 12660]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterProScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

3D structure

• AlphaFold DB: Q0P9A8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	100	100	1