Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CJ12660_RS03165 Genome accession   NZ_CP028910
Coordinates   597579..597962 (+) Length   127 a.a.
NCBI ID   WP_002918422.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC 12660     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 592579..602962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ12660_RS03145 (CJ12660_0607) - 592658..594592 (-) 1935 WP_002870085.1 ribonuclease R family protein -
  CJ12660_RS03150 (CJ12660_0608) ilvC 594711..595733 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  CJ12660_RS03155 (CJ12660_0609) - 595737..596819 (+) 1083 WP_002852295.1 divergent polysaccharide deacetylase family protein -
  CJ12660_RS03160 (CJ12660_0610) dprA 596809..597582 (+) 774 WP_002918419.1 DNA-processing protein DprA Machinery gene
  CJ12660_RS03165 (CJ12660_0611) dprB 597579..597962 (+) 384 WP_002918422.1 Holliday junction resolvase RuvX Machinery gene
  CJ12660_RS03170 (CJ12660_0612) - 597991..598830 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CJ12660_RS03175 (CJ12660_0613) msrA 599006..599503 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  CJ12660_RS03180 (CJ12660_0614) ppa 599545..600063 (-) 519 WP_002867724.1 inorganic diphosphatase -
  CJ12660_RS03185 (CJ12660_0615) adk 600073..600651 (-) 579 WP_002859580.1 adenylate kinase -
  CJ12660_RS03190 (CJ12660_0616) aspS 600648..602399 (-) 1752 WP_002908827.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14188.71 Da        Isoelectric Point: 9.0848

>NTDB_id=249151 CJ12660_RS03165 WP_002918422.1 597579..597962(+) (dprB) [Campylobacter jejuni strain NCTC 12660]
MRALALDIGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGIANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=249151 CJ12660_RS03165 WP_002918422.1 597579..597962(+) (dprB) [Campylobacter jejuni strain NCTC 12660]
ATGAGAGCTTTGGCTTTAGATATAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGAATACGGCATAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449