Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   CP942_RS22020 Genome accession   NZ_CP023666
Coordinates   4411299..4411895 (-) Length   198 a.a.
NCBI ID   WP_003182896.1    Uniprot ID   A0A2U9VM47
Organism   Bacillus paralicheniformis strain Bac48     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4406299..4416895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP942_RS22000 - 4406674..4407372 (+) 699 WP_105980450.1 DnaD domain-containing protein -
  CP942_RS22005 nth 4407389..4408051 (+) 663 WP_023857420.1 endonuclease III -
  CP942_RS22010 - 4408048..4408551 (+) 504 WP_105980452.1 YpoC family protein -
  CP942_RS22015 - 4408572..4411241 (-) 2670 WP_105980454.1 penicillin-binding protein 1A -
  CP942_RS22020 recU 4411299..4411895 (-) 597 WP_003182896.1 Holliday junction resolvase RecU Machinery gene
  CP942_RS22025 - 4411949..4412908 (+) 960 WP_035338534.1 DUF2515 domain-containing protein -
  CP942_RS22030 sspM 4412940..4413044 (-) 105 WP_009328007.1 acid-soluble spore protein SspM -
  CP942_RS22035 - 4413243..4413470 (+) 228 WP_075213145.1 YppD family protein -
  CP942_RS22040 - 4413528..4413899 (+) 372 WP_026579400.1 YppE family protein -
  CP942_RS22045 - 4413923..4414123 (-) 201 WP_011198064.1 YppF family protein -
  CP942_RS22050 - 4414302..4414748 (+) 447 WP_020451916.1 YppG family protein -
  CP942_RS22055 - 4414767..4415186 (-) 420 WP_023857414.1 Hsp20 family protein -
  CP942_RS22060 - 4415359..4415865 (+) 507 WP_105980456.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23143.26 Da        Isoelectric Point: 9.3852

>NTDB_id=249143 CP942_RS22020 WP_003182896.1 4411299..4411895(-) (recU) [Bacillus paralicheniformis strain Bac48]
MIRYPNGKSYQPKTAASSLQKKPSYSNRGMTLEDDLNETNMYYQSHSIAVIHKKPTPVQIVQVDYPKRSAAVIKEAYFKQ
SSTTDYNGVYKGRYIDFEAKETKSRTSFPLQNFHDHQIEHMKQVVAQDGICFVIISAFEEIYFLEAEKLFYFWERKKQNG
RKSIRKDELQEAAHPISLGYSPRIDYIKIIDQLYFSPS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=249143 CP942_RS22020 WP_003182896.1 4411299..4411895(-) (recU) [Bacillus paralicheniformis strain Bac48]
GTGATTCGTTACCCGAACGGGAAATCGTATCAGCCGAAAACAGCTGCCTCATCCTTGCAAAAGAAGCCGTCGTATTCCAA
TCGCGGCATGACCCTCGAAGATGACCTGAATGAAACGAATATGTATTATCAATCTCATTCGATTGCGGTCATCCATAAAA
AACCGACTCCTGTACAGATTGTTCAGGTCGATTATCCGAAGCGAAGCGCTGCGGTGATCAAGGAAGCATATTTCAAGCAG
TCGTCAACTACTGATTATAATGGGGTTTATAAAGGCCGCTACATCGATTTTGAAGCGAAAGAAACGAAGAGCCGGACCTC
TTTCCCGCTTCAGAATTTCCACGATCATCAGATCGAGCATATGAAGCAGGTTGTGGCGCAAGACGGCATTTGTTTTGTTA
TCATATCCGCTTTTGAAGAAATTTATTTTTTGGAAGCAGAAAAATTATTTTATTTCTGGGAGCGGAAAAAGCAAAACGGC
AGAAAATCGATCCGAAAAGACGAGCTTCAGGAAGCCGCTCACCCTATTTCACTTGGATACTCGCCAAGAATTGATTATAT
TAAGATTATTGATCAGTTGTATTTTTCGCCATCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(28-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U9VM47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

82.09

100

0.833

Multiple sequence alignment