Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   CP942_RS20845 Genome accession   NZ_CP023666
Coordinates   4155671..4156471 (+) Length   266 a.a.
NCBI ID   WP_003183361.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain Bac48     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4150671..4161471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP942_RS20825 - 4150697..4151542 (+) 846 WP_020452130.1 TlyA family RNA methyltransferase -
  CP942_RS20830 ahrC 4151706..4152155 (+) 450 WP_020452129.1 transcriptional regulator AhrC/ArgR -
  CP942_RS20835 recN 4152187..4153917 (+) 1731 WP_105980357.1 DNA repair protein RecN Machinery gene
  CP942_RS20840 spoIVB 4154066..4155382 (+) 1317 WP_105980359.1 SpoIVB peptidase -
  CP942_RS20845 spo0A 4155671..4156471 (+) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  CP942_RS20850 - 4156813..4157109 (+) 297 WP_105980361.1 antimicrobial peptide LCI -
  CP942_RS22625 - 4157240..4157809 (+) 570 WP_199792215.1 serine O-acetyltransferase -
  CP942_RS20865 - 4158309..4158614 (+) 306 WP_105980363.1 membrane lipoprotein lipid attachment site-containing protein -
  CP942_RS20870 - 4158650..4159270 (+) 621 WP_105980365.1 N-acetylmuramoyl-L-alanine amidase -
  CP942_RS20875 - 4159405..4160130 (+) 726 WP_075213166.1 glycerophosphodiester phosphodiesterase -
  CP942_RS20880 - 4160241..4160495 (-) 255 WP_075213165.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29541.06 Da        Isoelectric Point: 6.6109

>NTDB_id=249142 CP942_RS20845 WP_003183361.1 4155671..4156471(+) (spo0A) [Bacillus paralicheniformis strain Bac48]
MEKIKVCVADDNRELVGLLSEYIEGQSDMEVLGVAYNGQECLSLFKDKEPDVLVLDIIMPHLDGLAVLERLRESQLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGSQLTHRAPSSQSSVLRPQPESPKKNLDASITTII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MSKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=249142 CP942_RS20845 WP_003183361.1 4155671..4156471(+) (spo0A) [Bacillus paralicheniformis strain Bac48]
GTGGAGAAAATTAAAGTATGTGTTGCTGATGATAACAGGGAGCTTGTCGGCCTATTAAGCGAATATATCGAGGGACAAAG
CGACATGGAAGTACTTGGTGTCGCGTACAACGGACAGGAATGCCTTTCGTTGTTTAAAGACAAGGAGCCCGATGTGCTTG
TGCTGGATATTATCATGCCTCACCTCGACGGATTGGCCGTTCTTGAAAGGCTGAGGGAATCGCAGCTTAAAAAGCAGCCG
AATGTCATCATGCTGACGGCGTTCGGTCAGGAAGACGTGACGAAAAAAGCTGTAGATTTGGGCGCGTCGTATTTTATTTT
GAAGCCTTTTGACATGGAGAACTTAGTCGGCCATATCCGCCAGGTCAGCGGAAACGGATCTCAATTGACACACCGTGCCC
CGTCTTCTCAAAGCAGTGTGCTTCGGCCGCAGCCGGAATCGCCGAAGAAAAACCTGGACGCCAGCATTACGACCATCATC
CACGAAATCGGCGTGCCCGCTCATATAAAAGGCTATTTATACTTAAGGGAAGCCATCTCCATGGTGTATAACGACATCGA
ACTGCTCGGGAGCATTACAAAAGTGCTTTATCCGGATATCGCCAAAAAATTCAACACGACTGCAAGCCGCGTCGAACGGG
CGATTCGCCACGCCATCGAAGTCGCATGGAGCAGAGGCAACATCGACTCGATTTCGTCACTTTTCGGCTACACAGTCAGC
ATGTCAAAAGCCAAGCCGACGAATTCAGAATTCATCGCGATGGTCGCAGACAAGCTGAGACTGGAGCATAAGGCTTCTTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

92.135

100

0.925

Multiple sequence alignment