Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | CP942_RS20575 | Genome accession | NZ_CP023666 |
| Coordinates | 4110311..4111375 (+) | Length | 354 a.a. |
| NCBI ID | WP_039072848.1 | Uniprot ID | - |
| Organism | Bacillus paralicheniformis strain Bac48 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4105311..4116375
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CP942_RS20535 | - | 4105736..4106845 (+) | 1110 | WP_035338374.1 | hypothetical protein | - |
| CP942_RS20540 | - | 4106861..4107175 (+) | 315 | WP_020452182.1 | MTH1187 family thiamine-binding protein | - |
| CP942_RS20545 | - | 4107236..4107409 (-) | 174 | WP_003183486.1 | DUF2759 domain-containing protein | - |
| CP942_RS20550 | - | 4107565..4108203 (+) | 639 | WP_020452181.1 | MBL fold metallo-hydrolase | - |
| CP942_RS20555 | - | 4108239..4108484 (-) | 246 | WP_020452180.1 | DUF2626 domain-containing protein | - |
| CP942_RS20560 | - | 4108695..4109072 (+) | 378 | WP_003183482.1 | Spx/MgsR family RNA polymerase-binding regulatory protein | - |
| CP942_RS20570 | - | 4109314..4110153 (+) | 840 | WP_020452179.1 | STAS domain-containing protein | - |
| CP942_RS20575 | comGA | 4110311..4111375 (+) | 1065 | WP_039072848.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| CP942_RS20580 | comGB | 4111365..4112399 (+) | 1035 | WP_035338372.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| CP942_RS20585 | comGC | 4112413..4112706 (+) | 294 | WP_020452176.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| CP942_RS20590 | comGD | 4112712..4113149 (+) | 438 | WP_020452175.1 | competence type IV pilus minor pilin ComGD | - |
| CP942_RS22935 | comGF | 4113133..4113876 (+) | 744 | WP_234025536.1 | competence type IV pilus minor pilin ComGF | - |
| CP942_RS20605 | comGG | 4113888..4114253 (+) | 366 | WP_105980341.1 | competence type IV pilus minor pilin ComGG | - |
| CP942_RS20610 | - | 4114342..4114524 (+) | 183 | WP_020452171.1 | YqzE family protein | - |
| CP942_RS20615 | - | 4114554..4114874 (-) | 321 | WP_023855188.1 | YqzG/YhdC family protein | - |
| CP942_RS20620 | tapA | 4115152..4115880 (+) | 729 | WP_020452169.1 | amyloid fiber anchoring/assembly protein TapA | - |
Sequence
Protein
Download Length: 354 a.a. Molecular weight: 39838.33 Da Isoelectric Point: 9.1063
>NTDB_id=249136 CP942_RS20575 WP_039072848.1 4110311..4111375(+) (comGA) [Bacillus paralicheniformis strain Bac48]
MYTIESLSGRLIDEAYRMKASDIHIVPGEKEAVVRFRIDDELFQKERLTRNECSRLISHFKFLSSMDIGERRLPQSGALT
LYINRQPVHLRMSTLPTIHDESLVIRLLPKMSSKPLTKLSLFPSATFKLLSFLKHSHGLILFTGPTGSGKTTTLYSLIEY
AKRHFKRNIITLEDPVESRSENILQVQVNEKAGMTYSAGLKAVLRHDPDMIILGEIRDAETAQIAVRAALTGHLVLSSMH
AKNAKGAIYRLLEFGVDMTEIEQTLVAISAQRLVGLVCPFCGDNCSLYCRLSRPVRRASVFELLYGKSLNLCIEEAKGRC
GDIKTETLKTLIQKGIALGYLPSNTYERWIGHED
MYTIESLSGRLIDEAYRMKASDIHIVPGEKEAVVRFRIDDELFQKERLTRNECSRLISHFKFLSSMDIGERRLPQSGALT
LYINRQPVHLRMSTLPTIHDESLVIRLLPKMSSKPLTKLSLFPSATFKLLSFLKHSHGLILFTGPTGSGKTTTLYSLIEY
AKRHFKRNIITLEDPVESRSENILQVQVNEKAGMTYSAGLKAVLRHDPDMIILGEIRDAETAQIAVRAALTGHLVLSSMH
AKNAKGAIYRLLEFGVDMTEIEQTLVAISAQRLVGLVCPFCGDNCSLYCRLSRPVRRASVFELLYGKSLNLCIEEAKGRC
GDIKTETLKTLIQKGIALGYLPSNTYERWIGHED
Nucleotide
Download Length: 1065 bp
>NTDB_id=249136 CP942_RS20575 WP_039072848.1 4110311..4111375(+) (comGA) [Bacillus paralicheniformis strain Bac48]
TTGTACACGATTGAATCATTAAGCGGAAGATTAATTGACGAGGCATATAGAATGAAGGCGTCAGACATTCATATTGTTCC
CGGTGAAAAAGAGGCGGTGGTTCGCTTCAGGATTGATGATGAACTTTTTCAAAAAGAAAGATTAACGAGAAATGAGTGCT
CAAGGCTCATTTCTCACTTTAAATTCCTTTCTTCGATGGATATTGGGGAAAGACGGCTGCCGCAAAGCGGAGCTTTGACT
CTTTATATCAACCGTCAGCCCGTTCATTTAAGAATGTCCACTCTGCCCACCATCCATGATGAAAGCTTGGTCATCAGGCT
TCTTCCCAAGATGAGCAGCAAGCCGCTCACAAAGCTCTCATTGTTTCCGAGTGCAACATTCAAGCTGCTGTCTTTTCTGA
AGCATTCCCACGGATTAATTCTGTTCACCGGTCCGACAGGCTCGGGGAAAACGACAACACTCTATTCTTTAATCGAATAC
GCTAAGCGGCATTTTAAGCGAAATATCATTACCTTGGAAGACCCTGTTGAATCAAGAAGCGAAAACATTTTGCAAGTGCA
AGTAAACGAAAAAGCTGGCATGACTTATTCTGCGGGGTTGAAGGCGGTGCTTCGCCACGATCCGGACATGATCATCCTCG
GGGAAATTCGCGATGCCGAAACAGCCCAAATCGCAGTCAGGGCAGCTTTGACAGGACACCTTGTTTTATCGAGCATGCAT
GCGAAAAATGCCAAAGGCGCAATATACAGGCTGCTCGAGTTCGGCGTTGATATGACAGAAATTGAACAAACACTGGTCGC
AATCAGCGCCCAGCGCCTCGTCGGTCTCGTCTGCCCGTTTTGCGGCGACAACTGCTCTTTATATTGCAGATTGTCGAGGC
CTGTGAGAAGAGCAAGCGTCTTCGAGCTTTTGTACGGAAAAAGCCTCAATCTCTGCATCGAAGAAGCAAAAGGCAGGTGC
GGTGACATAAAAACAGAAACATTGAAAACGCTGATCCAGAAGGGAATAGCACTCGGATATCTGCCGTCGAATACTTATGA
ACGCTGGATAGGCCATGAAGATTAA
TTGTACACGATTGAATCATTAAGCGGAAGATTAATTGACGAGGCATATAGAATGAAGGCGTCAGACATTCATATTGTTCC
CGGTGAAAAAGAGGCGGTGGTTCGCTTCAGGATTGATGATGAACTTTTTCAAAAAGAAAGATTAACGAGAAATGAGTGCT
CAAGGCTCATTTCTCACTTTAAATTCCTTTCTTCGATGGATATTGGGGAAAGACGGCTGCCGCAAAGCGGAGCTTTGACT
CTTTATATCAACCGTCAGCCCGTTCATTTAAGAATGTCCACTCTGCCCACCATCCATGATGAAAGCTTGGTCATCAGGCT
TCTTCCCAAGATGAGCAGCAAGCCGCTCACAAAGCTCTCATTGTTTCCGAGTGCAACATTCAAGCTGCTGTCTTTTCTGA
AGCATTCCCACGGATTAATTCTGTTCACCGGTCCGACAGGCTCGGGGAAAACGACAACACTCTATTCTTTAATCGAATAC
GCTAAGCGGCATTTTAAGCGAAATATCATTACCTTGGAAGACCCTGTTGAATCAAGAAGCGAAAACATTTTGCAAGTGCA
AGTAAACGAAAAAGCTGGCATGACTTATTCTGCGGGGTTGAAGGCGGTGCTTCGCCACGATCCGGACATGATCATCCTCG
GGGAAATTCGCGATGCCGAAACAGCCCAAATCGCAGTCAGGGCAGCTTTGACAGGACACCTTGTTTTATCGAGCATGCAT
GCGAAAAATGCCAAAGGCGCAATATACAGGCTGCTCGAGTTCGGCGTTGATATGACAGAAATTGAACAAACACTGGTCGC
AATCAGCGCCCAGCGCCTCGTCGGTCTCGTCTGCCCGTTTTGCGGCGACAACTGCTCTTTATATTGCAGATTGTCGAGGC
CTGTGAGAAGAGCAAGCGTCTTCGAGCTTTTGTACGGAAAAAGCCTCAATCTCTGCATCGAAGAAGCAAAAGGCAGGTGC
GGTGACATAAAAACAGAAACATTGAAAACGCTGATCCAGAAGGGAATAGCACTCGGATATCTGCCGTCGAATACTTATGA
ACGCTGGATAGGCCATGAAGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
67.797 |
100 |
0.678 |
| pilB | Vibrio cholerae strain A1552 |
38.671 |
93.503 |
0.362 |