Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   CP942_RS20255 Genome accession   NZ_CP023666
Coordinates   4053538..4054308 (+) Length   256 a.a.
NCBI ID   WP_020452240.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain Bac48     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4048538..4059308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP942_RS20225 - 4048881..4050935 (+) 2055 WP_234025607.1 HD family phosphohydrolase -
  CP942_RS20230 ybeY 4050932..4051408 (+) 477 WP_020452244.1 rRNA maturation RNase YbeY -
  CP942_RS20235 - 4051386..4051766 (+) 381 WP_020452243.1 diacylglycerol kinase family protein -
  CP942_RS20240 - 4051899..4052309 (+) 411 WP_020452242.1 cytidine deaminase -
  CP942_RS20245 era 4052290..4053195 (+) 906 WP_105980314.1 GTPase Era -
  CP942_RS20250 - 4053357..4053500 (+) 144 WP_003183626.1 YqzL family protein -
  CP942_RS20255 recO 4053538..4054308 (+) 771 WP_020452240.1 DNA repair protein RecO Machinery gene
  CP942_RS20260 glyQ 4054641..4055528 (+) 888 WP_020452239.1 glycine--tRNA ligase subunit alpha -
  CP942_RS20265 glyS 4055521..4057560 (+) 2040 WP_105980316.1 glycine--tRNA ligase subunit beta -
  CP942_RS20270 - 4057758..4058396 (+) 639 WP_025804968.1 helix-turn-helix transcriptional regulator -
  CP942_RS20275 - 4058422..4059234 (+) 813 WP_023855239.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29527.17 Da        Isoelectric Point: 8.3124

>NTDB_id=249135 CP942_RS20255 WP_020452240.1 4053538..4054308(+) (recO) [Bacillus paralicheniformis strain Bac48]
MLTKCEGIVLRTNDYGETNKIITLLTREHGKIGVLARGAKKPNSRLSAISQPFLYASFLFRKSSGLGTLEQGEMIESMRH
IREDLFLTAYAAYITELIDKGTEEKKPNPFLFELLLQSMRRLDDGTDPDIIANLIEVKMLSVMGLYPELDECVHCKSKDG
TFHFSIRDNGFICHRCFAKDPYRIPLSPASARLLRLFFYFDLSRLGNVSVKQETKDELKRVIQTYYDEYSGIYLKSRRFM
EQMDNMKKMLGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=249135 CP942_RS20255 WP_020452240.1 4053538..4054308(+) (recO) [Bacillus paralicheniformis strain Bac48]
ATGCTGACGAAATGTGAAGGTATCGTCCTTCGTACAAACGACTATGGTGAAACAAATAAAATCATTACGCTGTTGACGAG
AGAACACGGGAAAATCGGTGTGCTGGCAAGGGGCGCCAAAAAGCCGAACAGCCGCTTGTCAGCGATTTCCCAGCCGTTCC
TTTATGCTTCTTTTTTATTCCGCAAATCATCCGGTCTCGGCACATTGGAGCAGGGCGAGATGATCGAAAGCATGAGGCAT
ATACGCGAGGATCTGTTTTTAACAGCATACGCGGCCTACATCACTGAATTAATCGACAAGGGAACGGAGGAAAAGAAACC
GAATCCGTTTTTATTTGAGCTGCTTCTTCAGTCGATGAGGAGGCTCGATGACGGTACAGATCCCGACATTATCGCCAACC
TTATCGAAGTTAAAATGCTCAGCGTGATGGGGCTGTATCCGGAGCTGGATGAATGTGTACATTGCAAAAGCAAAGACGGC
ACATTTCATTTTTCGATCCGCGACAACGGCTTTATCTGCCACCGCTGTTTTGCGAAAGATCCATACAGGATACCGCTGTC
TCCCGCATCCGCCAGGCTGTTGAGGCTGTTTTTTTATTTTGACTTGTCAAGGCTCGGCAATGTCTCGGTCAAACAGGAGA
CGAAGGATGAGCTGAAAAGGGTCATACAGACGTACTATGACGAGTACTCAGGGATCTACCTGAAATCGCGGCGCTTCATG
GAACAAATGGACAATATGAAAAAGATGCTGGGCGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

77.344

100

0.773

Multiple sequence alignment