Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CP942_RS15510 Genome accession   NZ_CP023666
Coordinates   3148543..3148827 (+) Length   94 a.a.
NCBI ID   WP_105979765.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain Bac48     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3143543..3153827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP942_RS15475 - 3144330..3145007 (+) 678 WP_105979755.1 ABC transporter permease -
  CP942_RS15480 - 3145193..3145561 (+) 369 WP_105979757.1 GntR family transcriptional regulator -
  CP942_RS15485 - 3145562..3146437 (+) 876 WP_105979759.1 ABC transporter ATP-binding protein -
  CP942_RS15490 - 3146434..3147117 (+) 684 WP_105979761.1 hypothetical protein -
  CP942_RS15495 - 3147160..3147558 (-) 399 WP_199792209.1 helix-turn-helix domain-containing protein -
  CP942_RS15500 - 3147727..3148128 (-) 402 WP_105980590.1 transcriptional regulator -
  CP942_RS15505 - 3148281..3148514 (+) 234 WP_085959538.1 helix-turn-helix domain-containing protein -
  CP942_RS15510 abrB 3148543..3148827 (+) 285 WP_105979765.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CP942_RS15515 secG 3148998..3149228 (+) 231 WP_003185418.1 preprotein translocase subunit SecG -
  CP942_RS15520 - 3149369..3150115 (+) 747 WP_105979767.1 alpha/beta hydrolase -
  CP942_RS15525 rnr 3150129..3152432 (+) 2304 WP_059230941.1 ribonuclease R -
  CP942_RS15530 smpB 3152548..3153021 (+) 474 WP_009329604.1 SsrA-binding protein SmpB -
  CP942_RS15540 - 3153601..3153726 (+) 126 Protein_3017 peptidoglycan-binding domain-containing protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10471.35 Da        Isoelectric Point: 6.3182

>NTDB_id=249120 CP942_RS15510 WP_105979765.1 3148543..3148827(+) (abrB) [Bacillus paralicheniformis strain Bac48]
MKNTGIVRRIDELGRVVLPVEMRRVLNINEKDPLEIYTDGENIILTKYAANMACLMTGDITTKNKTYAGGKIVLSPRGAE
MLLEDMMAALSEKL

Nucleotide


Download         Length: 285 bp        

>NTDB_id=249120 CP942_RS15510 WP_105979765.1 3148543..3148827(+) (abrB) [Bacillus paralicheniformis strain Bac48]
GTGAAAAATACGGGAATTGTCCGGAGAATCGATGAGCTCGGCAGAGTCGTTCTCCCGGTCGAAATGCGCAGGGTGCTGAA
TATCAATGAAAAGGACCCGCTCGAAATATACACCGACGGAGAAAATATCATTTTGACAAAATACGCCGCAAACATGGCAT
GCTTGATGACCGGCGACATCACCACGAAAAATAAAACGTATGCGGGCGGCAAAATCGTACTCAGCCCAAGGGGAGCGGAA
ATGCTGCTGGAAGATATGATGGCGGCCTTGTCAGAAAAGTTATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-85)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.044

96.809

0.543

Multiple sequence alignment