Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CP942_RS11580 Genome accession   NZ_CP023666
Coordinates   2352075..2352365 (+) Length   96 a.a.
NCBI ID   WP_085959887.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain Bac48     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2347075..2357365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP942_RS11565 - 2347288..2348484 (-) 1197 WP_020449801.1 G5 and 3D domain-containing protein -
  CP942_RS11570 - 2348729..2349496 (-) 768 WP_105979407.1 TatD family hydrolase -
  CP942_RS11575 metG 2349580..2351568 (-) 1989 WP_020449799.1 methionine--tRNA ligase -
  CP942_RS11580 abrB 2352075..2352365 (+) 291 WP_085959887.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CP942_RS11585 rsmI 2352415..2353290 (-) 876 WP_105980570.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  CP942_RS11590 - 2353265..2353558 (-) 294 WP_103750525.1 GIY-YIG nuclease family protein -
  CP942_RS11595 - 2353545..2354288 (-) 744 WP_020449796.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  CP942_RS11600 yabA 2354353..2354715 (-) 363 WP_020449795.1 DNA replication initiation control protein YabA -
  CP942_RS11605 - 2354730..2355557 (-) 828 WP_020449794.1 stage 0 sporulation family protein -
  CP942_RS11610 holB 2355560..2356549 (-) 990 WP_020449793.1 DNA polymerase III subunit delta' -
  CP942_RS11615 - 2356561..2357001 (-) 441 WP_020449792.1 YaaR family protein -
  CP942_RS11620 - 2357013..2357342 (-) 330 WP_003178156.1 cyclic-di-AMP receptor -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10680.43 Da        Isoelectric Point: 5.1848

>NTDB_id=249105 CP942_RS11580 WP_085959887.1 2352075..2352365(+) (abrB) [Bacillus paralicheniformis strain Bac48]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=249105 CP942_RS11580 WP_085959887.1 2352075..2352365(+) (abrB) [Bacillus paralicheniformis strain Bac48]
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGATGAGCTAGGACGCGTGGTGATTCCGATCGAACTTCGCCGTAC
GCTTGGAATCGCGGAAAAAGACGCTCTTGAAATCTATGTAGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTTTCTGATGACAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCCTGAAGGC
GCTGAGCAAATCATTAACGAAATTCAAGCACAACTTCAATCTCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment