Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CJ12567_RS03150 Genome accession   NZ_CP028909
Coordinates   596831..597214 (+) Length   127 a.a.
NCBI ID   WP_002858579.1    Uniprot ID   -
Organism   Campylobacter jejuni strain 12567     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 591831..602214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ12567_RS03130 (CJ12567_0606) - 591910..593844 (-) 1935 WP_002864864.1 ribonuclease R family protein -
  CJ12567_RS03135 (CJ12567_0607) ilvC 593963..594985 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  CJ12567_RS03140 (CJ12567_0608) - 594989..596071 (+) 1083 WP_002864866.1 divergent polysaccharide deacetylase family protein -
  CJ12567_RS03145 (CJ12567_0609) dprA 596061..596834 (+) 774 WP_002858613.1 DNA-processing protein DprA Machinery gene
  CJ12567_RS03150 (CJ12567_0610) dprB 596831..597214 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  CJ12567_RS03155 (CJ12567_0611) - 597243..598082 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CJ12567_RS03160 (CJ12567_0612) msrA 598258..598755 (-) 498 WP_002858555.1 peptide-methionine (S)-S-oxide reductase MsrA -
  CJ12567_RS03165 (CJ12567_0613) ppa 598796..599314 (-) 519 WP_002852138.1 inorganic diphosphatase -
  CJ12567_RS03170 (CJ12567_0614) - 599274..599903 (-) 630 WP_108535344.1 adenylate kinase -
  CJ12567_RS03175 (CJ12567_0615) aspS 599900..601651 (-) 1752 WP_002871806.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14064.61 Da        Isoelectric Point: 9.5430

>NTDB_id=249103 CJ12567_RS03150 WP_002858579.1 596831..597214(+) (dprB) [Campylobacter jejuni strain 12567]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=249103 CJ12567_RS03150 WP_002858579.1 596831..597214(+) (dprB) [Campylobacter jejuni strain 12567]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACTTGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449

Multiple sequence alignment