Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CP942_RS09240 Genome accession   NZ_CP023666
Coordinates   1835265..1836218 (-) Length   317 a.a.
NCBI ID   WP_026580546.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain Bac48     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1830265..1841218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP942_RS09220 - 1831008..1832429 (+) 1422 WP_105979293.1 MDR family MFS transporter -
  CP942_RS09225 - 1832611..1833558 (-) 948 WP_023855630.1 siderophore ABC transporter substrate-binding protein -
  CP942_RS09230 - 1833573..1834331 (-) 759 WP_020450172.1 ABC transporter ATP-binding protein -
  CP942_RS09235 - 1834331..1835275 (-) 945 WP_020450171.1 iron chelate uptake ABC transporter family permease subunit -
  CP942_RS09240 ceuB 1835265..1836218 (-) 954 WP_026580546.1 ABC transporter permease Machinery gene
  CP942_RS09245 - 1836496..1837857 (+) 1362 WP_105979294.1 aspartate kinase -
  CP942_RS23180 - 1837993..1838757 (+) 765 Protein_1811 MCP four helix bundle domain-containing protein -
  CP942_RS23185 - 1838758..1839711 (+) 954 WP_373367326.1 methyl-accepting chemotaxis protein -
  CP942_RS09255 - 1839743..1841170 (-) 1428 WP_039073204.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35107.47 Da        Isoelectric Point: 10.1004

>NTDB_id=249099 CP942_RS09240 WP_026580546.1 1835265..1836218(-) (ceuB) [Bacillus paralicheniformis strain Bac48]
MKLRYLLLMLIILSISSIFIGVKELSPLDLFRFNEDEIQTLYISRIPRLISIVLAGMSLSICGLIMQQLTRNKFVSPTTA
GTMDWARLGVIIAIVLFSSAGIVVKILFAFVFALFGSFLFVKILDRIKFKDAIFIPLVGMMLGSVVSAISTFMAYQYNII
QNVNAWFEGNFSLVMKGRYELLFLSIPLVIIAYLFANKFTLAGMGESFSINLGLNYKRVVNIGLIIVSIISSVVILTVGT
LPFLGLIIPNIVSIYRGDHLKNSLPHTAVLGAVFVLFCDIAGRLVIYPYEISVGLMVGIIGSGVFLYLLLRRKAYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=249099 CP942_RS09240 WP_026580546.1 1835265..1836218(-) (ceuB) [Bacillus paralicheniformis strain Bac48]
ATGAAATTACGATACTTATTGCTAATGCTCATCATTCTTTCAATCAGCTCGATTTTCATCGGCGTTAAGGAGCTTTCGCC
TCTTGATCTTTTCCGCTTTAACGAGGACGAAATTCAAACGCTTTACATAAGTAGAATTCCGCGCTTGATTAGCATCGTGC
TTGCGGGAATGAGCTTGAGCATTTGCGGGCTGATCATGCAGCAGCTGACGCGCAATAAATTTGTTTCACCGACCACCGCT
GGAACGATGGATTGGGCGAGGCTCGGTGTGATCATTGCGATCGTGCTTTTTTCGTCTGCAGGAATTGTGGTTAAAATACT
GTTTGCCTTTGTTTTTGCACTGTTTGGCAGTTTTTTGTTCGTCAAAATTTTGGACAGAATCAAGTTCAAAGATGCGATCT
TCATCCCTCTCGTCGGTATGATGCTCGGAAGTGTTGTCAGCGCCATCTCCACTTTCATGGCTTATCAGTACAATATCATT
CAAAACGTCAATGCATGGTTTGAAGGGAATTTTTCGCTGGTCATGAAGGGGAGGTATGAGCTCTTATTTCTGAGTATACC
GCTCGTTATCATTGCCTATCTGTTCGCCAATAAATTTACGTTGGCCGGGATGGGGGAGTCTTTTTCCATCAATCTTGGAT
TGAATTATAAGCGGGTGGTCAATATCGGATTGATCATCGTATCTATTATTTCGTCCGTCGTCATCCTGACGGTCGGCACG
CTTCCCTTTTTGGGATTGATCATCCCGAACATCGTGTCCATCTACAGGGGAGATCATTTGAAAAACAGCCTGCCTCATAC
GGCGGTTCTCGGAGCCGTTTTCGTCTTGTTTTGCGATATAGCGGGACGTCTCGTCATTTACCCGTACGAAATTTCGGTTG
GTTTGATGGTCGGCATCATCGGGAGCGGCGTTTTTCTTTACTTGCTTTTAAGGAGAAAAGCCTATGCGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.582

99.685

0.514

Multiple sequence alignment