Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CJ12567_RS01035 Genome accession   NZ_CP028909
Coordinates   201097..202602 (+) Length   501 a.a.
NCBI ID   WP_002865217.1    Uniprot ID   -
Organism   Campylobacter jejuni strain 12567     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 196097..207602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ12567_RS01010 (CJ12567_0192) fliI 196519..197904 (-) 1386 WP_002851735.1 flagellar protein export ATPase FliI -
  CJ12567_RS01015 (CJ12567_0193) folE 197904..198476 (-) 573 WP_002851990.1 GTP cyclohydrolase I FolE -
  CJ12567_RS01020 (CJ12567_0194) tig 198619..199953 (+) 1335 WP_002851938.1 trigger factor -
  CJ12567_RS01025 (CJ12567_0195) clpP 199953..200537 (+) 585 WP_002806309.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  CJ12567_RS01030 (CJ12567_0196) def 200573..201100 (+) 528 WP_002851936.1 peptide deformylase -
  CJ12567_RS01035 (CJ12567_0197) comM 201097..202602 (+) 1506 WP_002865217.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CJ12567_RS01040 (CJ12567_0198) - 202604..203301 (+) 698 Protein_196 NYN domain-containing protein -
  CJ12567_RS01045 (CJ12567_0199) - 203285..204655 (+) 1371 WP_002851837.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  CJ12567_RS01050 (CJ12567_0200) purN 204646..205212 (+) 567 WP_002851620.1 phosphoribosylglycinamide formyltransferase -
  CJ12567_RS01055 (CJ12567_0201) - 205284..206204 (+) 921 WP_002865215.1 PhnA domain-containing protein -
  CJ12567_RS01060 (CJ12567_0202) - 206214..207398 (+) 1185 WP_002851935.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56521.57 Da        Isoelectric Point: 8.8777

>NTDB_id=249097 CJ12567_RS01035 WP_002865217.1 201097..202602(+) (comM) [Campylobacter jejuni strain 12567]
MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASTAIKESVERIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDL
AIALLILLQNEELDDFFVVGELGLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
FKEKNYENFRFSHNHPLFANPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALGMHNILFEGSPGSGKSMCAKRLV
YIMPPQSLSEILMQNAYMSLDSKDCEFTKIRAFRHPHHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIE
SLREPLEDHKIHISRVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLYVAMDEISK
DDKTSISSKEMSEKILQAFIFSKKRRQKEFNGKLKDEDLSRFCVLEKDAKDTLDLAISRYNLSLRSLNKILKVSRSIADL
EQSLNISKTHILEALSFRARN

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=249097 CJ12567_RS01035 WP_002865217.1 201097..202602(+) (comM) [Campylobacter jejuni strain 12567]
ATGAAAAAACTAAAGTGCATAAGCTTTCATGAAGGCTTAGACATTATAGAGGTAGAATCCACTTTTACAAGAGGTTTGCC
AAATTTAAGCATAGTAGGGCTTGCAAGTACAGCGATTAAGGAAAGTGTCGAACGCATCAAAGCCACACTTTTAAGTTGTG
ATTTTGCTTTTCCTGCTAAAAAAATCACTATCAATCTTAGTCCTTCAGGCATCCCAAAAAAGGGATCGCATTTTGATTTG
GCTATCGCTTTATTAATCCTTTTGCAAAATGAAGAATTAGATGACTTTTTTGTAGTAGGAGAATTAGGACTTGATGGAAG
TATTAAAAGCACAAATGAGCTTTTTTCTTTGCTTTTGTTTCTCTCTGCTAAAATTAAAAAAGCTAAGATCGTTGTTCCAA
AAAGTATAGCACAAAAAGCTTCCATGATACCAAATTTAGAGGTTTATGGACTTGAAAATTTAAATGAAGCAATAGAGTTT
TTTAAAGAAAAAAATTATGAAAATTTTCGCTTTTCTCACAATCATCCTTTATTTGCAAACCCTTTACAAATAGAAAATGA
AATTTTTTTACAAAATATGGATTTTAAACTTGATTTTAAAGATATCAAAGGGCAGGAAAAAGCCAAAAGAGCTTGTATGA
TAGCTGCTTTAGGTATGCATAATATCTTATTTGAAGGAAGTCCAGGAAGTGGTAAAAGCATGTGTGCTAAACGCCTTGTT
TATATCATGCCCCCTCAAAGTTTAAGTGAAATTTTAATGCAAAATGCTTATATGTCTTTAGATTCAAAAGATTGTGAATT
TACTAAAATTCGTGCTTTTCGTCATCCTCATCATACTTCTACAAGAGCAAGTATTTTTGGCGGAGGAACAAAAAATGCCA
GAATTGGAGAAGTAGCACTTGCAAATGGTGGAGTATTGTTTTTTGATGAATTTCCACATTTTAACAAGCAAATCATAGAG
AGTTTAAGAGAACCTTTAGAGGATCATAAAATTCATATTTCAAGAGTAAATTCTAAAATCACTTATGAAACAAAATTTAG
CTTTATAGCTGCCCAAAATCCTTGTCCTTGTGGAAATTTATTCTCCAAAAATCTTTCTTGTGTTTGTAGTGAAAATGAGA
TTAAAAAATACAAAAATCACATTTCAGCTCCTATTATGGATAGGATTGATCTTTATGTAGCTATGGATGAGATCAGCAAG
GATGATAAAACGAGTATAAGTTCTAAAGAAATGAGTGAAAAAATTTTACAAGCTTTTATTTTTAGTAAAAAACGGAGGCA
AAAAGAATTTAATGGGAAATTAAAAGATGAAGATTTAAGTCGTTTTTGTGTATTGGAAAAAGATGCCAAAGATACGCTAG
ATTTAGCAATTTCACGTTATAATCTTTCTTTGCGATCGCTTAATAAAATTTTAAAAGTTTCAAGAAGTATAGCGGATTTA
GAACAAAGTCTTAATATTAGCAAAACCCATATTTTAGAAGCTTTAAGCTTTAGAGCAAGGAATTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(18-134)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

47.495

99.601

0.473

Multiple sequence alignment