Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   CP942_RS05775 Genome accession   NZ_CP023666
Coordinates   1152701..1153279 (-) Length   192 a.a.
NCBI ID   WP_026579946.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain Bac48     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1147701..1158279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP942_RS05755 - 1149088..1150863 (+) 1776 WP_105979094.1 S8 family peptidase -
  CP942_RS05760 lepB 1150992..1151510 (-) 519 WP_020450832.1 signal peptidase I -
  CP942_RS05765 - 1151523..1152134 (-) 612 WP_039072639.1 TVP38/TMEM64 family protein -
  CP942_RS05770 - 1152342..1152707 (+) 366 WP_020450830.1 hypothetical protein -
  CP942_RS05775 comK 1152701..1153279 (-) 579 WP_026579946.1 competence protein ComK Regulator
  CP942_RS05780 - 1153552..1153785 (+) 234 WP_020450828.1 IDEAL domain-containing protein -
  CP942_RS05785 - 1153854..1154711 (-) 858 WP_020450827.1 SDR family oxidoreductase -
  CP942_RS05790 - 1154832..1156382 (+) 1551 WP_043054265.1 FAD-dependent oxidoreductase -
  CP942_RS23150 - 1156489..1157022 (+) 534 Protein_1156 protoglobin family protein -
  CP942_RS23155 - 1157287..1157781 (+) 495 WP_237562672.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22420.64 Da        Isoelectric Point: 8.6274

>NTDB_id=249092 CP942_RS05775 WP_026579946.1 1152701..1153279(-) (comK) [Bacillus paralicheniformis strain Bac48]
MSTEDMTKDTYEVNSSTMAVLPLGEGEKPASKILETDRTFRVNMKPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPPI
MVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFCAAKYDNTFVTFVNGETLELPVSITSFENQVYRTAWLRTKFIDRIEGN
AMQKKQEFMLYPKEDRNQLIYEFILRELKKRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=249092 CP942_RS05775 WP_026579946.1 1152701..1153279(-) (comK) [Bacillus paralicheniformis strain Bac48]
ATGAGCACAGAGGATATGACAAAAGATACGTATGAAGTAAACAGTTCGACAATGGCTGTCCTGCCTCTGGGAGAGGGGGA
GAAACCCGCTTCAAAAATACTCGAGACCGACAGGACTTTCCGCGTCAATATGAAGCCGTTTCAGATCATCGAAAGAAGCT
GCCGCTATTTCGGATCGAGCTATGCGGGAAGAAAAGCGGGCACATATGAGGTCATTAAAGTTTCCCATAAACCGCCGATC
ATGGTGGATCACTCAAACAATATTTTTCTTTTTCCCACATTTTCCTCAACTCGTCCTCAGTGCGGGTGGCTTTCCCATGC
GCATGTTCACGAGTTTTGCGCGGCAAAGTATGACAACACGTTTGTCACGTTTGTCAACGGGGAAACGCTGGAGCTGCCCG
TATCCATCACATCTTTTGAAAACCAGGTTTACCGAACGGCATGGTTGAGAACAAAATTTATCGACCGGATTGAAGGAAAC
GCCATGCAGAAGAAACAGGAATTTATGCTTTATCCGAAGGAAGACCGGAATCAGCTGATATACGAATTCATCCTCAGGGA
GCTGAAAAAGCGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(9-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

68.617

97.917

0.672

Multiple sequence alignment