Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CP942_RS03410 Genome accession   NZ_CP023666
Coordinates   703117..703404 (-) Length   95 a.a.
NCBI ID   WP_020451235.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain Bac48     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 698117..708404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP942_RS03395 ade 699037..700758 (-) 1722 WP_101561227.1 adenine deaminase -
  CP942_RS03400 - 700886..701548 (-) 663 WP_020451237.1 potassium channel family protein -
  CP942_RS03405 - 701612..702949 (-) 1338 WP_020451236.1 ATP-binding protein -
  CP942_RS03410 abrB 703117..703404 (-) 288 WP_020451235.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CP942_RS03415 mreBH 703710..704717 (+) 1008 WP_020451234.1 rod-share determining protein MreBH -
  CP942_RS03420 - 704791..704921 (+) 131 Protein_679 protein YkpC -
  CP942_RS03425 - 705012..706244 (+) 1233 WP_020451233.1 aminopeptidase -
  CP942_RS03430 - 706369..706743 (-) 375 WP_020451232.1 YybH family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10626.48 Da        Isoelectric Point: 5.8979

>NTDB_id=249078 CP942_RS03410 WP_020451235.1 703117..703404(-) (abrB) [Bacillus paralicheniformis strain Bac48]
MKAIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDQDKIVLKKYKPHGVCLMTGEITSENREYGNGKITLSPEGAE
LLLEEIKAALNEVKA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=249078 CP942_RS03410 WP_020451235.1 703117..703404(-) (abrB) [Bacillus paralicheniformis strain Bac48]
TTGAAAGCAATTGGAGTTGTGAGAAAAGTAGACGAACTCGGCCGGATCGTGATGCCGATTGAATTGAGAAGAGCTTTGGA
TATTTCGATCAAGGACAGCATCGAATTCTTTGTCGACCAAGATAAAATTGTCCTGAAAAAATATAAACCGCACGGTGTGT
GCCTGATGACCGGTGAAATCACTTCTGAAAACCGCGAGTACGGAAACGGGAAAATTACGCTGAGTCCTGAGGGGGCCGAA
TTGCTTTTGGAAGAAATAAAAGCTGCCTTAAACGAAGTGAAAGCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537

Multiple sequence alignment