Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   CP942_RS01480 Genome accession   NZ_CP023666
Coordinates   331606..332034 (-) Length   142 a.a.
NCBI ID   WP_020451590.1    Uniprot ID   A0A6N2GRD1
Organism   Bacillus paralicheniformis strain Bac48     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 326606..337034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP942_RS01450 tkt 327189..329192 (-) 2004 WP_020451595.1 transketolase -
  CP942_RS01455 - 329356..329589 (-) 234 WP_020451594.1 DUF896 domain-containing protein -
  CP942_RS01460 - 329655..330302 (-) 648 WP_020451593.1 recombinase family protein -
  CP942_RS01465 yneA 330321..330632 (-) 312 WP_020451592.1 cell division suppressor protein YneA -
  CP942_RS01470 lexA 330784..331407 (+) 624 WP_020451591.1 transcriptional repressor LexA -
  CP942_RS01480 nucA/comI 331606..332034 (-) 429 WP_020451590.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  CP942_RS01490 - 332328..333167 (-) 840 WP_105980489.1 thymidylate synthase -
  CP942_RS01495 - 333227..333988 (-) 762 WP_105978846.1 hypothetical protein -
  CP942_RS01500 - 334077..334910 (-) 834 WP_020451587.1 prohibitin family protein -
  CP942_RS22460 - 334903..335043 (-) 141 WP_023857597.1 hypothetical protein -
  CP942_RS01505 wrbA 335352..335966 (-) 615 WP_026579653.1 NAD(P)H:quinone oxidoreductase -
  CP942_RS01510 - 336168..336776 (-) 609 WP_023857599.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15420.36 Da        Isoelectric Point: 7.8950

>NTDB_id=249072 CP942_RS01480 WP_020451590.1 331606..332034(-) (nucA/comI) [Bacillus paralicheniformis strain Bac48]
MIKKWAVHLLFSALVLLGLSGGAAYSPQHAEGAARYDDVLYFPASRYPETGAHISDAIKAGHSDVCTIERSGADKRRQES
LKGIPTKPGFDRDEWPMAMCEEGGKGASVRYVSSSDNRGAGSWVGNRLSDYADGTRILFIVR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=249072 CP942_RS01480 WP_020451590.1 331606..332034(-) (nucA/comI) [Bacillus paralicheniformis strain Bac48]
ATGATCAAAAAATGGGCGGTTCATCTGCTGTTTTCCGCATTGGTGCTGCTTGGGCTTTCGGGAGGGGCTGCATATTCTCC
TCAGCATGCCGAAGGCGCTGCAAGGTATGATGACGTATTGTATTTTCCGGCATCGCGCTATCCTGAAACAGGTGCTCATA
TAAGCGATGCGATCAAAGCGGGCCATTCAGATGTCTGCACAATTGAAAGATCTGGAGCGGATAAGCGCCGTCAGGAATCA
TTAAAGGGGATTCCGACTAAGCCGGGCTTTGACCGTGACGAATGGCCGATGGCCATGTGTGAAGAAGGGGGAAAAGGAGC
GTCGGTCAGATATGTCAGCTCATCGGATAACCGCGGAGCCGGCTCCTGGGTCGGGAACAGGCTGAGCGATTACGCTGACG
GGACGAGAATTTTGTTTATCGTTCGATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N2GRD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

59.524

88.732

0.528

Multiple sequence alignment