Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   C1A39_RS06350 Genome accession   NZ_CP028896
Coordinates   1223047..1223727 (-) Length   226 a.a.
NCBI ID   WP_011681349.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS5     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1218047..1228727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1A39_RS06330 (C1A39_06535) - 1218599..1219093 (-) 495 WP_014621752.1 YkgJ family cysteine cluster protein -
  C1A39_RS06335 (C1A39_06540) - 1219178..1221178 (-) 2001 WP_024704286.1 ABC transporter permease -
  C1A39_RS06340 (C1A39_06545) - 1221180..1221938 (-) 759 WP_011681347.1 ABC transporter ATP-binding protein -
  C1A39_RS06345 (C1A39_06550) - 1222083..1223057 (-) 975 WP_024704287.1 sensor histidine kinase -
  C1A39_RS06350 (C1A39_06555) braR 1223047..1223727 (-) 681 WP_011681349.1 response regulator transcription factor Regulator
  C1A39_RS06355 (C1A39_06560) - 1224178..1224758 (+) 581 Protein_1205 xanthine phosphoribosyltransferase -
  C1A39_RS06360 (C1A39_06565) - 1224758..1226025 (+) 1268 Protein_1206 nucleobase:cation symporter-2 family protein -
  C1A39_RS06365 (C1A39_06570) - 1226153..1227502 (+) 1350 WP_024704288.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26206.51 Da        Isoelectric Point: 4.8038

>NTDB_id=249046 C1A39_RS06350 WP_011681349.1 1223047..1223727(-) (braR) [Streptococcus thermophilus strain CS5]
MHKILLVEDDEVIRQQVKKILEQWEYEVVLVEDFMEVLSLFVKEEPHLVLMDIGLPLFNGYHWCQEIRKVSKVPIMFLSS
RDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQSLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQIL
QVLFERSGNIVSREDLMKELWNSDFFIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGYGLRHDG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=249046 C1A39_RS06350 WP_011681349.1 1223047..1223727(-) (braR) [Streptococcus thermophilus strain CS5]
ATGCATAAGATTTTATTAGTTGAGGACGACGAGGTTATCCGTCAACAAGTCAAGAAAATACTAGAACAGTGGGAGTACGA
AGTTGTTCTTGTTGAAGATTTCATGGAAGTATTATCTCTTTTTGTAAAAGAAGAACCCCACTTGGTTCTTATGGATATTG
GTTTACCTCTATTCAACGGTTATCACTGGTGTCAGGAAATTCGGAAGGTCTCCAAGGTGCCTATTATGTTCTTGTCTTCC
AGAGATCAGGCCATGGATATCGTTATGGCAATCAATATGGGTGGGGACGACTTTGTGACTAAACCCTTTGACCAAAATGT
TCTCTTGGCAAAAATTCAAGGGCTTTTGCGCCGATCTTATGAGTTTGGAAAGGATCAGAGTCTTTTGGAATATATGGGTG
TGATTCTGAACCTTAAGGCCATGGATCTGGTTTATCAGGGAGAAGTCGTTTCTTTGACTAAGAATGAATTTCAGATTTTA
CAAGTTCTCTTTGAGCGTTCTGGTAATATCGTTAGTCGTGAAGACCTCATGAAGGAGCTTTGGAATAGTGACTTCTTTAT
TGATGATAACACTCTCTCTGTAAATGTGGCACGTTTACGTAAGAAGTTAGAGGCAGTTGGTTTGAAGGACTTTATTGAAA
CCAAGAAAGGTGTCGGTTACGGGTTGCGTCATGATGGGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

51.835

96.46

0.5