Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   CP943_RS13735 Genome accession   NZ_CP023665
Coordinates   2709425..2710459 (-) Length   344 a.a.
NCBI ID   WP_105981076.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain Bac84     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2704425..2715459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP943_RS13685 tasA 2704495..2705289 (-) 795 WP_020452167.1 biofilm matrix protein TasA -
  CP943_RS13690 sipW 2705362..2705946 (-) 585 WP_020452168.1 signal peptidase I SipW -
  CP943_RS13695 tapA 2705943..2706671 (-) 729 WP_020452169.1 amyloid fiber anchoring/assembly protein TapA -
  CP943_RS13700 - 2706949..2707269 (+) 321 WP_023855188.1 YqzG/YhdC family protein -
  CP943_RS13705 - 2707299..2707481 (-) 183 WP_020452171.1 YqzE family protein -
  CP943_RS13710 comGG 2707570..2707935 (-) 366 WP_025811163.1 competence type IV pilus minor pilin ComGG -
  CP943_RS13715 comGF 2707947..2708435 (-) 489 WP_224067282.1 competence type IV pilus minor pilin ComGF -
  CP943_RS13720 comGE 2708344..2708691 (-) 348 WP_023855191.1 competence type IV pilus minor pilin ComGE -
  CP943_RS13725 comGD 2708675..2709112 (-) 438 WP_039072845.1 competence type IV pilus minor pilin ComGD -
  CP943_RS13730 comGC 2709118..2709411 (-) 294 WP_039072846.1 competence type IV pilus major pilin ComGC Machinery gene
  CP943_RS13735 comGB 2709425..2710459 (-) 1035 WP_105981076.1 competence type IV pilus assembly protein ComGB Machinery gene
  CP943_RS13740 comGA 2710449..2711513 (-) 1065 WP_025811157.1 competence type IV pilus ATPase ComGA Machinery gene
  CP943_RS13745 - 2711671..2712510 (-) 840 WP_105981077.1 STAS domain-containing protein -
  CP943_RS13755 - 2712752..2713129 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  CP943_RS13760 - 2713340..2713585 (+) 246 WP_020452180.1 DUF2626 domain-containing protein -
  CP943_RS13765 - 2713621..2714259 (-) 639 WP_020452181.1 MBL fold metallo-hydrolase -
  CP943_RS13770 - 2714415..2714588 (+) 174 WP_003183486.1 DUF2759 domain-containing protein -
  CP943_RS13775 - 2714649..2714963 (-) 315 WP_095291085.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39665.93 Da        Isoelectric Point: 9.6576

>NTDB_id=249043 CP943_RS13735 WP_105981076.1 2709425..2710459(-) (comGB) [Bacillus paralicheniformis strain Bac84]
MKIKMKWPVREQADILKKLGDMMKSGYTILDALSMLKLQLNERRSADLTFAIEKLTEGRSVFQVLEMISFHKDAVTIVYF
AAQHGNLPYAFRQSGELLHRKIAQTEKLKKAARYPLFLVLTVCVIISIMKSAIIPQFSAIYESMNVETSFATTLIFSVFD
HFYLFIAGMMLIAAALSLYYLCSFRHKPPEDKMTFLIRIPLLGQTFKLFNSYFLSLQLSNLLQAGLSVYDSLKAFESQPF
LTFHKNEAKRLIERLKQGESLEQMLAGHPFYENDLAKAVAHGQLNGHLYRELYSYSQFLIERLERKAEKWTGLIQPLIYG
LTAAMILILYLSMLLPMYQMMNQL

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=249043 CP943_RS13735 WP_105981076.1 2709425..2710459(-) (comGB) [Bacillus paralicheniformis strain Bac84]
ATGAAGATTAAAATGAAGTGGCCCGTCCGGGAACAGGCGGACATTCTGAAAAAACTCGGAGACATGATGAAGAGCGGATA
TACGATTTTGGATGCTTTAAGTATGCTGAAACTGCAATTGAATGAAAGGCGAAGTGCAGATCTGACATTTGCGATAGAGA
AGCTGACAGAAGGGCGATCTGTGTTTCAAGTGCTTGAAATGATTTCATTTCATAAGGATGCTGTTACCATTGTTTACTTT
GCCGCACAGCACGGGAATTTGCCATATGCCTTTCGGCAGAGCGGAGAGCTGCTTCACCGCAAGATCGCTCAAACCGAAAA
ACTAAAGAAAGCCGCCAGATATCCCTTGTTTTTAGTTTTAACGGTCTGCGTCATTATCTCTATTATGAAATCGGCAATCA
TCCCGCAATTTTCCGCGATCTATGAATCAATGAACGTTGAAACGTCTTTTGCAACGACCCTCATCTTTTCGGTTTTTGAT
CATTTTTATCTTTTTATCGCAGGAATGATGTTGATTGCCGCCGCTTTATCCCTCTATTATCTGTGTTCATTTCGCCATAA
ACCTCCAGAAGACAAAATGACCTTTCTCATTAGAATTCCCTTGCTGGGCCAAACCTTCAAACTATTCAACAGTTATTTTT
TATCGCTCCAATTGAGCAATCTTTTGCAAGCTGGTCTGTCTGTATATGACAGTTTAAAAGCATTTGAAAGCCAGCCGTTT
TTAACATTTCATAAAAATGAAGCGAAGCGCCTGATCGAGCGGCTGAAACAAGGGGAGAGTCTGGAGCAGATGCTGGCCGG
GCATCCGTTTTATGAAAATGATCTGGCGAAGGCTGTTGCTCACGGCCAATTAAACGGACACTTATACAGAGAGCTGTATT
CATACAGTCAATTTTTGATTGAACGGCTTGAACGGAAAGCAGAAAAATGGACAGGTTTGATCCAGCCATTGATTTACGGG
CTAACAGCGGCGATGATATTAATTCTTTATTTGTCTATGCTTTTGCCAATGTATCAAATGATGAACCAGTTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(216-336)

Type II secretion system (T2SS), protein F (T2SSF)

(16-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

56.656

93.895

0.532

Multiple sequence alignment