Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   CP943_RS13730 Genome accession   NZ_CP023665
Coordinates   2709118..2709411 (-) Length   97 a.a.
NCBI ID   WP_039072846.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain Bac84     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2704118..2714411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP943_RS13685 tasA 2704495..2705289 (-) 795 WP_020452167.1 biofilm matrix protein TasA -
  CP943_RS13690 sipW 2705362..2705946 (-) 585 WP_020452168.1 signal peptidase I SipW -
  CP943_RS13695 tapA 2705943..2706671 (-) 729 WP_020452169.1 amyloid fiber anchoring/assembly protein TapA -
  CP943_RS13700 - 2706949..2707269 (+) 321 WP_023855188.1 YqzG/YhdC family protein -
  CP943_RS13705 - 2707299..2707481 (-) 183 WP_020452171.1 YqzE family protein -
  CP943_RS13710 comGG 2707570..2707935 (-) 366 WP_025811163.1 competence type IV pilus minor pilin ComGG -
  CP943_RS13715 comGF 2707947..2708435 (-) 489 WP_224067282.1 competence type IV pilus minor pilin ComGF -
  CP943_RS13720 comGE 2708344..2708691 (-) 348 WP_023855191.1 competence type IV pilus minor pilin ComGE -
  CP943_RS13725 comGD 2708675..2709112 (-) 438 WP_039072845.1 competence type IV pilus minor pilin ComGD -
  CP943_RS13730 comGC 2709118..2709411 (-) 294 WP_039072846.1 competence type IV pilus major pilin ComGC Machinery gene
  CP943_RS13735 comGB 2709425..2710459 (-) 1035 WP_105981076.1 competence type IV pilus assembly protein ComGB Machinery gene
  CP943_RS13740 comGA 2710449..2711513 (-) 1065 WP_025811157.1 competence type IV pilus ATPase ComGA Machinery gene
  CP943_RS13745 - 2711671..2712510 (-) 840 WP_105981077.1 STAS domain-containing protein -
  CP943_RS13755 - 2712752..2713129 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  CP943_RS13760 - 2713340..2713585 (+) 246 WP_020452180.1 DUF2626 domain-containing protein -
  CP943_RS13765 - 2713621..2714259 (-) 639 WP_020452181.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10698.59 Da        Isoelectric Point: 9.1200

>NTDB_id=249042 CP943_RS13730 WP_039072846.1 2709118..2709411(-) (comGC) [Bacillus paralicheniformis strain Bac84]
MNEKGFTLIEMLVVMLVISILLLITIPNVTKHNQSIQKKGCEGLINMVQAQITAYQMDHDGKTPSRADLESEGYVKKNLK
CPNGKVIKISNGKAQAD

Nucleotide


Download         Length: 294 bp        

>NTDB_id=249042 CP943_RS13730 WP_039072846.1 2709118..2709411(-) (comGC) [Bacillus paralicheniformis strain Bac84]
GTGAATGAAAAGGGATTTACACTGATAGAAATGTTAGTCGTCATGCTCGTCATCTCCATCCTGCTGTTGATCACCATACC
GAATGTGACCAAGCATAATCAAAGTATTCAAAAGAAAGGATGCGAAGGGTTAATTAATATGGTTCAAGCGCAAATCACGG
CTTATCAAATGGATCATGACGGGAAAACGCCGAGTAGGGCGGACCTTGAATCTGAAGGTTACGTGAAGAAGAACTTAAAG
TGCCCGAATGGGAAAGTAATTAAAATTTCAAACGGCAAAGCACAGGCTGATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

71.134

100

0.711
  comGC Staphylococcus aureus MW2

45.263

97.938

0.443
  comGC Staphylococcus aureus N315

45.263

97.938

0.443

Multiple sequence alignment