Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   CP943_RS13465 Genome accession   NZ_CP023665
Coordinates   2665606..2666406 (-) Length   266 a.a.
NCBI ID   WP_075213036.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain Bac84     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2660606..2671406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP943_RS13430 - 2661582..2661836 (+) 255 WP_020452121.1 DUF2627 domain-containing protein -
  CP943_RS13435 - 2661948..2662673 (-) 726 WP_025811173.1 glycerophosphodiester phosphodiesterase -
  CP943_RS13440 - 2662808..2663428 (-) 621 WP_020452123.1 N-acetylmuramoyl-L-alanine amidase -
  CP943_RS13445 - 2663464..2663769 (-) 306 WP_020452124.1 membrane lipoprotein lipid attachment site-containing protein -
  CP943_RS22460 - 2664269..2664838 (-) 570 WP_020452125.1 serine O-acetyltransferase -
  CP943_RS13460 - 2664968..2665264 (-) 297 WP_020452126.1 antimicrobial peptide LCI -
  CP943_RS13465 spo0A 2665606..2666406 (-) 801 WP_075213036.1 sporulation transcription factor Spo0A Regulator
  CP943_RS13470 spoIVB 2666696..2667946 (-) 1251 WP_031304732.1 SpoIVB peptidase -
  CP943_RS13475 recN 2668161..2669891 (-) 1731 WP_101561071.1 DNA repair protein RecN Machinery gene
  CP943_RS13480 ahrC 2669923..2670372 (-) 450 WP_020452129.1 transcriptional regulator AhrC/ArgR -
  CP943_RS13485 - 2670536..2671381 (-) 846 WP_020452130.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29531.02 Da        Isoelectric Point: 6.6109

>NTDB_id=249038 CP943_RS13465 WP_075213036.1 2665606..2666406(-) (spo0A) [Bacillus paralicheniformis strain Bac84]
MEKIKVCVADDNRELVGLLSEYIEGQSDMEVLGVAYNGQECLSLFKDKEPDVLVLDIIMPHLDGLAVLERLRESQLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGSQLTHRAPSSQSSVLRPQSESPKKNLDASITTII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MSKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=249038 CP943_RS13465 WP_075213036.1 2665606..2666406(-) (spo0A) [Bacillus paralicheniformis strain Bac84]
GTGGAGAAAATTAAAGTATGTGTTGCTGATGATAACAGGGAGCTTGTCGGCCTATTAAGCGAATATATCGAGGGACAAAG
CGACATGGAAGTACTTGGTGTCGCATACAACGGACAGGAATGCCTTTCGTTGTTTAAAGACAAGGAGCCCGATGTGCTTG
TGCTGGATATTATCATGCCTCACCTCGACGGATTGGCCGTTCTTGAAAGGCTGAGGGAATCGCAGCTTAAAAAGCAGCCG
AATGTCATCATGCTGACGGCGTTCGGTCAGGAAGACGTGACGAAAAAAGCTGTAGATTTGGGCGCGTCGTATTTTATTTT
GAAGCCTTTTGACATGGAGAACTTAGTCGGCCATATCCGCCAGGTCAGCGGAAACGGATCTCAATTGACACACCGTGCCC
CGTCTTCTCAAAGCAGTGTGCTTCGGCCGCAGTCGGAATCGCCGAAGAAAAACCTGGACGCCAGCATTACGACCATCATC
CACGAAATCGGCGTGCCCGCTCATATAAAAGGCTATTTATACTTAAGGGAAGCCATCTCCATGGTGTATAACGACATCGA
ACTGCTCGGAAGCATTACAAAAGTGCTTTATCCGGATATCGCCAAAAAATTCAACACGACTGCAAGCCGAGTCGAACGGG
CGATTCGCCACGCCATCGAAGTCGCATGGAGCAGAGGCAACATCGACTCGATTTCGTCACTTTTCGGCTACACAGTCAGC
ATGTCAAAAGCCAAGCCGACGAATTCAGAATTCATCGCGATGGTCGCAGACAAGCTGAGACTGGAGCATAAGGCTTCTTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

92.884

100

0.932

Multiple sequence alignment