Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   CP943_RS12295 Genome accession   NZ_CP023665
Coordinates   2413816..2414412 (+) Length   198 a.a.
NCBI ID   WP_003182896.1    Uniprot ID   A0A2U9VM47
Organism   Bacillus paralicheniformis strain Bac84     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2408816..2419412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP943_RS12255 - 2409846..2410352 (-) 507 WP_020451914.1 PTS glucose transporter subunit IIA -
  CP943_RS12260 - 2410525..2410944 (+) 420 WP_020451915.1 hypothetical protein -
  CP943_RS12265 - 2410963..2411409 (-) 447 WP_105981032.1 YppG family protein -
  CP943_RS12270 - 2411588..2411788 (+) 201 WP_011198064.1 YppF family protein -
  CP943_RS12275 - 2411811..2412182 (-) 372 WP_105981033.1 YppE family protein -
  CP943_RS12280 - 2412240..2412467 (-) 228 WP_075213145.1 YppD family protein -
  CP943_RS12285 sspM 2412667..2412771 (+) 105 WP_009328007.1 acid-soluble spore protein SspM -
  CP943_RS12290 - 2412803..2413762 (-) 960 WP_105981034.1 DUF2515 domain-containing protein -
  CP943_RS12295 recU 2413816..2414412 (+) 597 WP_003182896.1 Holliday junction resolvase RecU Machinery gene
  CP943_RS12300 - 2414470..2417139 (+) 2670 WP_105981035.1 PBP1A family penicillin-binding protein -
  CP943_RS12305 - 2417160..2417663 (-) 504 WP_023857419.1 YpoC family protein -
  CP943_RS12310 nth 2417660..2418322 (-) 663 WP_023857420.1 endonuclease III -
  CP943_RS12315 - 2418339..2419037 (-) 699 WP_023857421.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23143.26 Da        Isoelectric Point: 9.3852

>NTDB_id=249037 CP943_RS12295 WP_003182896.1 2413816..2414412(+) (recU) [Bacillus paralicheniformis strain Bac84]
MIRYPNGKSYQPKTAASSLQKKPSYSNRGMTLEDDLNETNMYYQSHSIAVIHKKPTPVQIVQVDYPKRSAAVIKEAYFKQ
SSTTDYNGVYKGRYIDFEAKETKSRTSFPLQNFHDHQIEHMKQVVAQDGICFVIISAFEEIYFLEAEKLFYFWERKKQNG
RKSIRKDELQEAAHPISLGYSPRIDYIKIIDQLYFSPS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=249037 CP943_RS12295 WP_003182896.1 2413816..2414412(+) (recU) [Bacillus paralicheniformis strain Bac84]
GTGATTCGTTACCCGAACGGCAAATCGTATCAGCCGAAAACAGCTGCCTCATCCTTGCAAAAGAAGCCGTCGTATTCCAA
TCGCGGCATGACCCTCGAAGATGACCTGAATGAAACGAATATGTATTATCAATCTCATTCGATTGCGGTCATCCATAAAA
AACCGACTCCTGTACAGATTGTTCAGGTCGATTATCCGAAGCGAAGCGCTGCGGTGATCAAGGAAGCATATTTCAAGCAG
TCGTCAACTACTGATTATAATGGGGTTTATAAAGGCCGCTACATCGATTTTGAAGCGAAAGAAACGAAGAGCCGGACCTC
TTTCCCGCTTCAAAATTTCCACGATCATCAGATCGAGCATATGAAGCAGGTTGTGGCGCAAGACGGCATTTGTTTTGTTA
TCATATCCGCTTTTGAAGAAATTTATTTTTTGGAAGCAGAAAAATTATTTTATTTCTGGGAGCGGAAAAAGCAAAACGGC
AGAAAATCAATCCGAAAAGACGAGCTTCAGGAAGCCGCTCACCCTATTTCACTTGGATACTCGCCAAGAATTGATTATAT
TAAGATTATTGATCAGTTGTATTTTTCGCCATCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(28-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U9VM47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

82.09

100

0.833

Multiple sequence alignment