Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   CP943_RS10350 Genome accession   NZ_CP023665
Coordinates   2010695..2011171 (+) Length   158 a.a.
NCBI ID   WP_026579660.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain Bac84     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2005695..2016171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP943_RS10310 - 2005800..2006228 (+) 429 WP_026579666.1 HIT domain-containing protein -
  CP943_RS10320 - 2006859..2007161 (+) 303 WP_039072733.1 hypothetical protein -
  CP943_RS10325 - 2007402..2008382 (+) 981 WP_095290603.1 S9 family peptidase -
  CP943_RS10330 - 2008442..2008663 (+) 222 WP_026579662.1 hypothetical protein -
  CP943_RS10335 - 2008774..2009370 (+) 597 WP_023857610.1 cyclopropane-fatty-acyl-phospholipid synthase family protein -
  CP943_RS10340 - 2009476..2009958 (+) 483 WP_026579661.1 DUF4944 domain-containing protein -
  CP943_RS10345 - 2009992..2010564 (+) 573 WP_023857608.1 GNAT family N-acetyltransferase -
  CP943_RS10350 rok 2010695..2011171 (+) 477 WP_026579660.1 hypothetical protein Regulator
  CP943_RS22435 - 2011290..2011463 (+) 174 WP_020451569.1 hypothetical protein -
  CP943_RS10355 - 2011816..2012436 (-) 621 WP_026579659.1 hypothetical protein -
  CP943_RS10360 - 2012997..2013581 (+) 585 WP_020451571.1 TetR family transcriptional regulator -
  CP943_RS10365 - 2013662..2013994 (+) 333 WP_105980973.1 multidrug efflux SMR transporter -
  CP943_RS10370 - 2013997..2014314 (+) 318 WP_020451573.1 multidrug efflux SMR transporter -
  CP943_RS10375 speG 2014343..2014885 (+) 543 WP_020451574.1 spermidine N1-acetyltransferase -
  CP943_RS10380 - 2014922..2015248 (-) 327 WP_206761302.1 YxeA family protein -
  CP943_RS10385 - 2015458..2015898 (+) 441 WP_026579657.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18313.17 Da        Isoelectric Point: 10.0055

>NTDB_id=249035 CP943_RS10350 WP_026579660.1 2010695..2011171(+) (rok) [Bacillus paralicheniformis strain Bac84]
MFDEREALRLRLEQLGDAEIQVMRELRKERQDIYSKLRELDRESDPAINKKSSLIDLASAAAEELKQSQIAADKHPPIKT
PSHTIFQSKTTIQREAALNILSRYEEGLKGIKLKTEIEKETGFPIKNMTTFMKSLMKHRPDIKKPARGHYILQKEKDL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=249035 CP943_RS10350 WP_026579660.1 2010695..2011171(+) (rok) [Bacillus paralicheniformis strain Bac84]
ATGTTCGACGAAAGAGAAGCGTTGCGTTTGAGACTTGAACAGCTAGGTGATGCGGAGATTCAGGTGATGCGGGAATTGCG
AAAAGAACGACAGGACATTTATTCGAAGCTGCGTGAATTGGACCGGGAGAGTGATCCCGCAATTAACAAAAAATCTTCAT
TGATCGACTTGGCAAGCGCTGCAGCAGAGGAATTAAAACAATCCCAAATTGCCGCTGACAAACATCCGCCCATCAAGACT
CCATCTCATACTATTTTCCAATCAAAAACAACCATACAGCGCGAGGCTGCCTTAAACATTTTAAGCCGCTATGAAGAGGG
CTTGAAAGGCATTAAGCTCAAAACTGAAATCGAGAAAGAAACCGGCTTTCCGATTAAAAACATGACGACATTTATGAAGA
GCTTAATGAAACATCGCCCAGATATTAAAAAGCCTGCCCGCGGCCATTATATTTTGCAAAAAGAAAAAGACCTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

43.407

100

0.5

Multiple sequence alignment