Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CP943_RS09270 Genome accession   NZ_CP023665
Coordinates   1810560..1811462 (+) Length   300 a.a.
NCBI ID   WP_105980932.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain Bac84     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1805560..1816462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP943_RS09250 - 1806212..1807909 (+) 1698 WP_105981360.1 hypothetical protein -
  CP943_RS09255 - 1807906..1808190 (+) 285 WP_020451377.1 FlhB-like flagellar biosynthesis protein -
  CP943_RS09260 sucC 1808366..1809526 (+) 1161 WP_026579739.1 ADP-forming succinate--CoA ligase subunit beta -
  CP943_RS09265 sucD 1809545..1810447 (+) 903 WP_020451379.1 succinate--CoA ligase subunit alpha -
  CP943_RS09270 dprA 1810560..1811462 (+) 903 WP_105980932.1 DNA-processing protein DprA Machinery gene
  CP943_RS09275 topA 1811667..1813742 (+) 2076 WP_020451381.1 type I DNA topoisomerase -
  CP943_RS09280 trmFO 1813818..1815122 (+) 1305 WP_020451382.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CP943_RS09285 xerC 1815189..1816103 (+) 915 WP_020451383.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33107.54 Da        Isoelectric Point: 10.1513

>NTDB_id=249031 CP943_RS09270 WP_105980932.1 1810560..1811462(+) (dprA) [Bacillus paralicheniformis strain Bac84]
MNDSSELLILLRLRGTLSPSLLTKWWKQDPSLSLTGEKNHLLTKLSLKRSDLCSIRKLAKQELSNVKRLIRSYEAAGVRM
AAICSPDYPASLKTIHDPPPVLFLKGDVKLLNEQRLIGIVGTRSPSLYGKRAAVHLVRELCKKSWTIVSGLAKGIDGLAH
QESICSKGRTIGVIAGGFNSIYPREHRQLAGQMAENHLLVSEHPPHVKPQKWHFPMRNRLISGLTEGIVVVQGKEKSGSL
ITAYQALEQGREVFAVPGPIFDANSCGPSRLIQEGAKLVLNIEDILSELPPSRTQYPEPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=249031 CP943_RS09270 WP_105980932.1 1810560..1811462(+) (dprA) [Bacillus paralicheniformis strain Bac84]
ATGAACGACAGCAGCGAGCTTTTGATATTGCTCCGCCTTCGCGGCACACTCTCCCCTTCTCTGCTGACCAAGTGGTGGAA
GCAGGATCCTTCCTTGTCTCTTACGGGCGAAAAAAACCATCTTTTAACGAAGCTTTCATTAAAAAGATCAGACTTGTGCT
CCATACGAAAACTGGCGAAACAAGAACTGTCTAATGTTAAACGGCTCATCCGTTCTTACGAAGCGGCCGGAGTCCGCATG
GCCGCCATATGTTCCCCCGATTATCCAGCCAGCCTGAAAACCATTCATGACCCGCCTCCCGTCCTTTTTTTAAAAGGAGA
TGTTAAACTTCTCAATGAACAAAGACTGATCGGAATCGTCGGAACCCGCAGCCCGTCATTATACGGAAAAAGAGCAGCGG
TTCACCTTGTCAGGGAGCTTTGCAAAAAAAGCTGGACGATCGTCAGCGGCCTTGCAAAAGGAATTGACGGTCTTGCCCAT
CAGGAGAGCATCTGTTCAAAGGGAAGGACAATCGGCGTCATCGCGGGCGGATTCAATAGCATATATCCCCGTGAACACCG
CCAGCTCGCCGGTCAAATGGCCGAAAACCACCTGCTGGTATCAGAGCACCCTCCCCACGTTAAACCTCAAAAATGGCACT
TTCCGATGCGAAATCGGCTGATCAGCGGATTAACGGAAGGAATCGTTGTCGTCCAGGGAAAGGAAAAGAGCGGGTCGCTC
ATCACAGCATATCAAGCCCTTGAGCAGGGGCGGGAGGTGTTCGCCGTGCCTGGTCCGATCTTTGACGCCAACTCTTGCGG
TCCTTCAAGGCTGATCCAAGAAGGGGCGAAACTCGTATTGAATATTGAAGATATTTTGAGCGAACTGCCGCCTTCACGCA
CTCAATATCCGGAACCTGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

57.191

99.667

0.57
  dprA Haemophilus influenzae Rd KW20

45.763

78.667

0.36

Multiple sequence alignment