Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CP943_RS08445 Genome accession   NZ_CP023665
Coordinates   1647102..1647389 (+) Length   95 a.a.
NCBI ID   WP_020451235.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain Bac84     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1642102..1652389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP943_RS08425 - 1643764..1644138 (+) 375 WP_020451232.1 DUF4440 domain-containing protein -
  CP943_RS08430 - 1644263..1645495 (-) 1233 WP_105980917.1 aminopeptidase -
  CP943_RS08435 - 1645585..1645716 (-) 132 WP_003181378.1 protein YkpC -
  CP943_RS08440 mreBH 1645790..1646797 (-) 1008 WP_020451234.1 rod-share determining protein MreBH -
  CP943_RS08445 abrB 1647102..1647389 (+) 288 WP_020451235.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CP943_RS08450 - 1647557..1648894 (+) 1338 WP_020451236.1 ATP-binding protein -
  CP943_RS08455 - 1648958..1649620 (+) 663 WP_020451237.1 TrkA family potassium uptake protein -
  CP943_RS08460 ade 1649748..1651469 (+) 1722 WP_105981359.1 adenine deaminase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10626.48 Da        Isoelectric Point: 5.8979

>NTDB_id=249030 CP943_RS08445 WP_020451235.1 1647102..1647389(+) (abrB) [Bacillus paralicheniformis strain Bac84]
MKAIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDQDKIVLKKYKPHGVCLMTGEITSENREYGNGKITLSPEGAE
LLLEEIKAALNEVKA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=249030 CP943_RS08445 WP_020451235.1 1647102..1647389(+) (abrB) [Bacillus paralicheniformis strain Bac84]
TTGAAAGCAATTGGAGTTGTGAGAAAAGTAGACGAACTCGGCCGGATCGTGATGCCGATTGAATTGAGAAGAGCTTTGGA
TATTTCGATCAAGGACAGCATCGAATTCTTTGTCGACCAAGATAAAATTGTCCTGAAAAAATATAAACCGCACGGTGTGT
GCCTGATGACCGGTGAAATCACTTCTGAAAACCGCGAGTACGGAAACGGGAAAATTACGCTGAGTCCTGAGGGGGCCGAA
TTGCTTTTGGAAGAAATAAAAGCTGCCTTAAACGAAGTGAAAGCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537

Multiple sequence alignment