Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   CP943_RS06185 Genome accession   NZ_CP023665
Coordinates   1213733..1214311 (+) Length   192 a.a.
NCBI ID   WP_096747985.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain Bac84     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1208733..1219311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP943_RS22965 - 1209231..1209737 (-) 507 WP_370510583.1 methyl-accepting chemotaxis protein -
  CP943_RS22970 - 1210038..1210409 (-) 372 Protein_1158 protoglobin family protein -
  CP943_RS06170 - 1210630..1212180 (-) 1551 WP_043054265.1 FAD-dependent oxidoreductase -
  CP943_RS06175 - 1212301..1213158 (+) 858 WP_020450827.1 SDR family oxidoreductase -
  CP943_RS06180 - 1213227..1213460 (-) 234 WP_020450828.1 IDEAL domain-containing protein -
  CP943_RS06185 comK 1213733..1214311 (+) 579 WP_096747985.1 competence protein ComK Regulator
  CP943_RS06190 - 1214305..1214670 (-) 366 WP_105980857.1 hypothetical protein -
  CP943_RS06195 - 1214878..1215489 (+) 612 WP_020450831.1 TVP38/TMEM64 family protein -
  CP943_RS06200 lepB 1215502..1216020 (+) 519 WP_020450832.1 signal peptidase I -
  CP943_RS06210 - 1216149..1217924 (-) 1776 WP_105980858.1 S8 family peptidase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22390.61 Da        Isoelectric Point: 8.6274

>NTDB_id=249016 CP943_RS06185 WP_096747985.1 1213733..1214311(+) (comK) [Bacillus paralicheniformis strain Bac84]
MSTEDMTKDTYEVNSSTMAVLPLGEGEKPASKILEADRTFRVNMKPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPPI
MVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFCAAKYDNTFVTFVNGETLELPVSITSFENQVYRTAWLRTKFIDRIEGN
AMQKKQEFMLYPKEDRNQLIYEFILRELKKRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=249016 CP943_RS06185 WP_096747985.1 1213733..1214311(+) (comK) [Bacillus paralicheniformis strain Bac84]
ATGAGCACAGAGGATATGACAAAAGATACGTATGAAGTAAACAGTTCGACAATGGCTGTCCTGCCTCTGGGAGAGGGGGA
GAAACCCGCCTCAAAAATACTCGAGGCTGACAGGACTTTCCGCGTCAATATGAAGCCGTTTCAGATCATCGAAAGAAGCT
GCCGCTATTTCGGGTCGAGCTATGCGGGGAGAAAAGCGGGCACATATGAGGTCATTAAAGTTTCCCATAAACCGCCGATC
ATGGTGGATCACTCAAACAATATTTTTCTTTTTCCCACATTTTCCTCAACTCGTCCTCAGTGCGGGTGGCTTTCCCATGC
GCATGTTCACGAGTTTTGCGCGGCAAAGTATGACAACACGTTTGTCACGTTTGTCAACGGGGAAACGCTGGAGCTGCCCG
TATCCATCACATCTTTTGAAAACCAGGTTTACCGAACGGCATGGCTGAGAACAAAATTTATCGACCGGATTGAAGGAAAC
GCCATGCAGAAGAAACAGGAATTTATGCTCTATCCGAAGGAAGACCGGAATCAGCTGATATACGAATTCATCCTCAGGGA
GCTGAAAAAGCGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(9-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

68.617

97.917

0.672

Multiple sequence alignment