Detailed information NTG0249005

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: CP943_RS00755
• Genome accession: NZ_CP023665
• Coordinates: 137561..138940 (+)
• Length: 459 a.a.
• NCBI ID: WP_105980626.1
• Uniprot ID: -
• Organism: Bacillus paralicheniformis strain Bac84
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 132561..143940

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CP943_RS00735	-	132928..133392 (+)	465	WP_020449835.1	CtsR family transcriptional regulator	-
CP943_RS00740	-	133407..133961 (+)	555	WP_003178271.1	UvrB/UvrC motif-containing protein	-
CP943_RS00745	-	133961..135052 (+)	1092	WP_023855926.1	protein arginine kinase	-
CP943_RS00750	clpC	135049..137481 (+)	2433	WP_020449838.1	ATP-dependent protease ATP-binding subunit ClpC	Regulator
CP943_RS00755	radA	137561..138940 (+)	1380	WP_105980626.1	DNA repair protein RadA	Machinery gene
CP943_RS00760	disA	138944..140020 (+)	1077	WP_020449840.1	DNA integrity scanning diadenylate cyclase DisA	-
CP943_RS00765	-	140152..141240 (+)	1089	WP_009330350.1	PIN/TRAM domain-containing protein	-
CP943_RS00770	ispD	141257..141952 (+)	696	WP_020449841.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CP943_RS00775	ispF	141945..142421 (+)	477	WP_020449842.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-

Sequence

Protein

• Length: 459 a.a.
• Molecular weight: 49830.24 Da
• Isoelectric Point: 7.4339

>NTDB_id=249005 CP943_RS00755 WP_105980626.1 137561..138940(+) (radA) [Bacillus paralicheniformis strain Bac84]
MAKTKTKFICHSCGYESAKWMGKCPGCGTWNTMVEETIKKPAANRRTAFSHSVQTVQKPSPLTSIETTEEPRIKTKLGEF
NRVLGNGIVKGSLVLIGGDPGIGKSTLLLQVSAQLADSKENVLYISGEESVKQTKLRADRLGINSPTLHVLSETDMEYIT
SSIEEMNPSFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMRIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGAAGSSVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLLIAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPHPTDCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMIIPSANVEGWTKPKGIEVVGVENVAEALRASLGGS

Nucleotide

• Length: 1380 bp

>NTDB_id=249005 CP943_RS00755 WP_105980626.1 137561..138940(+) (radA) [Bacillus paralicheniformis strain Bac84]
ATGGCTAAAACAAAGACTAAATTCATTTGTCACTCATGCGGTTACGAATCCGCCAAGTGGATGGGGAAGTGCCCCGGATG
CGGCACATGGAATACCATGGTGGAAGAAACGATAAAAAAACCCGCCGCCAACAGAAGAACCGCTTTTTCACATTCCGTTC
AAACGGTGCAAAAGCCTTCACCTCTCACTTCAATCGAAACAACAGAAGAGCCGCGAATTAAAACGAAACTGGGCGAATTC
AACCGCGTCTTGGGAAACGGTATTGTCAAAGGTTCACTCGTTTTAATCGGAGGCGATCCCGGCATCGGGAAATCAACCTT
GCTGCTTCAAGTATCTGCCCAGCTCGCTGATTCAAAAGAAAATGTCCTGTACATCTCAGGTGAAGAATCGGTCAAGCAGA
CAAAGCTGAGAGCAGACCGTCTAGGCATCAACAGTCCCACTCTTCACGTTTTATCTGAAACCGATATGGAGTATATTACG
TCTTCTATAGAAGAGATGAATCCATCATTCGTGGTGGTTGATTCGATTCAAACCGTTTACCAAAGTGATATTACATCTGC
TCCAGGCAGCGTGTCCCAGGTCAGGGAATGCACCGCTGAGCTGATGAGAATTGCAAAAACAAAAGGGATTCCGATATTTA
TCGTCGGGCATGTCACAAAAGAAGGTTCGATTGCCGGACCGAGACTTCTGGAACATATGGTCGACACCGTCCTTTATTTT
GAAGGTGAGCGGCATCATACATTTCGGATTTTAAGAGCCGTCAAAAACCGGTTTGGATCAACGAATGAAATGGGAATCTT
TGAAATGAGGGAAGAGGGCCTTACAGAAGTGCTGAATCCGTCGGAGATCTTTCTCGAAGAGCGCTCGGCTGGAGCAGCCG
GCTCGAGTGTCGTGGCTTCAATGGAAGGCACGAGGCCGGTCTTAGTAGAGATTCAGGCGCTGATTTCCCCGACGAGTTTT
GGAAATCCGCGCAGGATGGCAACCGGAATTGATCATAACCGCGTCTCATTGCTGATAGCGGTTTTAGAGAAAAGGGTTGG
GCTGCTGCTGCAAAATCAAGACGCCTATTTAAAAGTCGCCGGCGGCGTCAAGCTGGACGAGCCGGCGATCGACCTCGCCG
TTGCTGTGAGCATCGCCTCAAGCTTCAGAGACACCCCGCCTCATCCGACGGATTGTTTTATCGGCGAAGTCGGCTTGACA
GGGGAAGTCCGCAGAGTATCAAGGATAGAACAGAGGGTGCAGGAAGCGGCGAAGCTTGGTTTTAAAAGAATGATTATTCC
TTCTGCAAATGTGGAAGGATGGACAAAGCCGAAAGGAATTGAAGTCGTCGGCGTTGAAAATGTAGCTGAGGCCCTTCGAG
CTTCATTAGGAGGATCATAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (364-430)

• AAA domain (AAA_25) (66-222)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	90.83	99.782	0.906
radA	Streptococcus mitis NCTC 12261	62.031	98.693	0.612
radA	Streptococcus pneumoniae Rx1	61.81	98.693	0.61
radA	Streptococcus pneumoniae D39	61.81	98.693	0.61
radA	Streptococcus pneumoniae R6	61.81	98.693	0.61
radA	Streptococcus pneumoniae TIGR4	61.81	98.693	0.61
radA	Streptococcus mitis SK321	61.589	98.693	0.608