Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CP943_RS00415 Genome accession   NZ_CP023665
Coordinates   75933..76223 (-) Length   96 a.a.
NCBI ID   WP_085959887.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain Bac84     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 70933..81223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP943_RS00375 - 70956..71285 (+) 330 WP_003178156.1 cyclic-di-AMP receptor -
  CP943_RS00380 - 71297..71737 (+) 441 WP_020449792.1 YaaR family protein -
  CP943_RS00385 holB 71749..72738 (+) 990 WP_020449793.1 DNA polymerase III subunit delta' -
  CP943_RS00390 - 72741..73568 (+) 828 WP_020449794.1 stage 0 sporulation family protein -
  CP943_RS00395 yabA 73583..73945 (+) 363 WP_020449795.1 DNA replication initiation control protein YabA -
  CP943_RS00400 - 74010..74753 (+) 744 WP_020449796.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  CP943_RS00405 - 74740..75033 (+) 294 WP_020449797.1 GIY-YIG nuclease family protein -
  CP943_RS00410 rsmI 75008..75883 (+) 876 WP_026579003.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  CP943_RS00415 abrB 75933..76223 (-) 291 WP_085959887.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CP943_RS00420 metG 76731..78719 (+) 1989 WP_026579002.1 methionine--tRNA ligase -
  CP943_RS00425 - 78803..79570 (+) 768 WP_026579001.1 TatD family hydrolase -
  CP943_RS00430 - 79815..81011 (+) 1197 WP_020449801.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10680.43 Da        Isoelectric Point: 5.1848

>NTDB_id=249003 CP943_RS00415 WP_085959887.1 75933..76223(-) (abrB) [Bacillus paralicheniformis strain Bac84]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=249003 CP943_RS00415 WP_085959887.1 75933..76223(-) (abrB) [Bacillus paralicheniformis strain Bac84]
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGATGAGCTAGGACGCGTGGTGATTCCGATCGAACTTCGCCGTAC
GCTTGGAATCGCGGAAAAAGACGCTCTTGAAATCTATGTAGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTTTCTGATGACAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCCTGAAGGC
GCTGAGCAAATCATTAACGAAATTCAAGCACAACTTCAATCTCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment