Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   CP943_RS00170 Genome accession   NZ_CP023665
Coordinates   30188..31300 (+) Length   370 a.a.
NCBI ID   WP_003178089.1    Uniprot ID   A0A415J9T0
Organism   Bacillus paralicheniformis strain Bac84     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 25188..36300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP943_RS00145 rnpA 25916..26275 (-) 360 WP_020453656.1 ribonuclease P protein component -
  CP943_RS00150 rpmH 26360..26494 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  CP943_RS00155 dnaA 27135..28475 (+) 1341 WP_023856797.1 chromosomal replication initiator protein DnaA -
  CP943_RS00160 dnaN 28653..29789 (+) 1137 WP_026580417.1 DNA polymerase III subunit beta -
  CP943_RS00165 yaaA 29956..30171 (+) 216 WP_003178084.1 S4 domain-containing protein YaaA -
  CP943_RS00170 recF 30188..31300 (+) 1113 WP_003178089.1 DNA replication/repair protein RecF Machinery gene
  CP943_RS00175 remB 31318..31560 (+) 243 WP_023856795.1 extracellular matrix regulator RemB -
  CP943_RS00180 gyrB 31621..33534 (+) 1914 WP_031305110.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  CP943_RS00185 gyrA 33726..36194 (+) 2469 WP_023856793.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42482.33 Da        Isoelectric Point: 6.7331

>NTDB_id=249001 CP943_RS00170 WP_003178089.1 30188..31300(+) (recF) [Bacillus paralicheniformis strain Bac84]
MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGS
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHKTLNEAEIFRVENGTLSD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=249001 CP943_RS00170 WP_003178089.1 30188..31300(+) (recF) [Bacillus paralicheniformis strain Bac84]
TTGTATATCCAAAATCTTACATTATCATCTTACCGTAATTATGAGCGCCTTGACCTTCAATTTGAAAACAAAGTGAATGT
GATTATCGGAGAGAACGCTCAAGGAAAAACGAATTTGATGGAAGCGATCTATGTGCTTGCGATGGCGAAATCCCATCGGA
CGTCAAATGATAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTCT
GTTCCCATTCAGCTCGTGATTTCCAAAAAAGGAAAAAAAGGTAAAGTCAATCATATTGAACAGCAGAAACTGAGCCAGTA
TGTCGGGGCTGTCAACACGATTATGTTCGCGCCGGAGGATTTAAATCTTGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGATATGGAAATCGGCCAAGTATCACCTGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAACGG
AATCATTTCCTGAAACAGCTTCAAACGAGAAAGCAAACCGACCAAACGATGCTTGACGTGCTGACGGAACAGCTTACGGA
ATTCGCGGCAAAGGTTGTGATGAAACGGCTTCAGTTTGTCGATCAGCTTGAAAAATGGGCTCAGCCCATTCATTCCGGAA
TTTCAAGAGGTCTGGAAGAGCTGACGTTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGGGTATCTCTGTCAGGTCCCCACAG
GGATGATGTTCTCTTCTACGTCAATGGCCGTGATGTGCAGACTTACGGATCGCAGGGCCAGCAGCGAACGACTGCTTTGT
CGCTTAAATTGGCTGAAATCGATTTGATTCAGGAAGAGATAGGAGAATATCCGATTCTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGCCGTGTTCAAACATTCGTAACAACGACAAGCGT
TGATGGAATTGATCATAAAACCTTAAACGAAGCGGAAATCTTTCGAGTTGAAAATGGCACGCTATCGGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A415J9T0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

89.13

99.459

0.886

Multiple sequence alignment