Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   A1552VC_RS17730 Genome accession   NZ_CP028895
Coordinates   609538..610164 (-) Length   208 a.a.
NCBI ID   WP_001277855.1    Uniprot ID   -
Organism   Vibrio cholerae strain A1552     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 604538..615164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1552VC_RS17715 (A1552VC_A03374) - 605808..607103 (+) 1296 WP_000208548.1 MFS transporter -
  A1552VC_RS17720 (A1552VC_A03375) - 607200..608216 (+) 1017 WP_000170557.1 nuclear transport factor 2 family protein -
  A1552VC_RS17725 (A1552VC_A03377) - 608477..609487 (+) 1011 WP_000555352.1 LacI family DNA-binding transcriptional regulator -
  A1552VC_RS17730 (A1552VC_A03378) vraR 609538..610164 (-) 627 WP_001277855.1 response regulator Regulator
  A1552VC_RS17735 (A1552VC_A03379) narQ 610154..611842 (-) 1689 WP_001901239.1 nitrate/nitrite two-component system sensor histidine kinase NarQ -
  A1552VC_RS17740 (A1552VC_A03380) napF 612075..612569 (+) 495 WP_000228048.1 ferredoxin-type protein NapF -
  A1552VC_RS17745 (A1552VC_A03381) - 612596..612916 (+) 321 WP_000082209.1 chaperone NapD -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23119.47 Da        Isoelectric Point: 4.5340

>NTDB_id=248987 A1552VC_RS17730 WP_001277855.1 609538..610164(-) (vraR) [Vibrio cholerae strain A1552]
MSCRVLLVDDHPLMRRGINQLLSFEEEFEVVAEAGSGAEAIALAHDLQPDLILLDLNMKGMSGLDTLTALRTDECDAYVV
ILTVSDSAADIEALVKAGADGYLLKDTEPDQLVALLKQAMQGEKAFSESVERYLLNREHTSNPFEALTEREMQIMSEVAK
GYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATILYLERYANA

Nucleotide


Download         Length: 627 bp        

>NTDB_id=248987 A1552VC_RS17730 WP_001277855.1 609538..610164(-) (vraR) [Vibrio cholerae strain A1552]
ATGAGTTGTAGAGTCCTTTTAGTGGATGATCACCCGCTGATGCGCCGTGGTATCAATCAACTATTGAGTTTTGAAGAAGA
ATTTGAGGTGGTTGCCGAAGCGGGGAGTGGGGCTGAAGCGATCGCTCTGGCGCATGATCTACAACCGGACTTGATTCTGC
TCGATCTCAATATGAAAGGGATGTCGGGATTGGATACGCTGACTGCGCTGCGCACCGATGAGTGTGACGCATATGTGGTG
ATCCTCACGGTTTCAGACAGCGCCGCAGATATTGAAGCATTAGTCAAAGCGGGGGCTGATGGCTATCTCCTCAAAGACAC
TGAGCCGGATCAACTGGTGGCGCTGCTTAAACAAGCCATGCAAGGCGAAAAAGCCTTTAGTGAGTCGGTCGAACGCTACC
TTTTAAATCGCGAGCATACGAGTAATCCTTTTGAAGCATTAACGGAACGTGAAATGCAAATTATGTCAGAAGTGGCAAAG
GGTTATCGCAATCGACAAATCGCCGACCGCCTGTTTATTTCTGAATCTACCGTCAAAGTGCACATGAAAAGCTTACTGAA
AAAGCTTGATGTGCCATCACGCACCGCTGCCACGATTCTTTATCTAGAGCGGTATGCTAATGCTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(146-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.5

96.154

0.389