Detailed information NTG0248986

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: CPC19_RS03775
• Genome accession: NZ_CP023664
• Coordinates: 758850..759848 (-)
• Length: 332 a.a.
• NCBI ID: WP_016390575.1
• Uniprot ID: S5TDV1
• Organism: Cycloclasticus sp. PY97N
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 753850..764848

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CPC19_RS03750 (CPC19_03750)	cyoE	754719..755609 (+)	891	WP_020932131.1	heme o synthase	-
CPC19_RS03755 (CPC19_03755)	-	755708..756232 (+)	525	WP_016390573.1	TIGR02281 family clan AA aspartic protease	-
CPC19_RS03760 (CPC19_03760)	rpoH	756255..757124 (-)	870	WP_015006614.1	RNA polymerase sigma factor RpoH	-
CPC19_RS03765 (CPC19_03765)	ftsX	757230..758189 (-)	960	WP_016390574.1	permease-like cell division protein FtsX	-
CPC19_RS03770 (CPC19_03770)	ftsE	758182..758844 (-)	663	WP_015006612.1	cell division ATP-binding protein FtsE	-
CPC19_RS03775 (CPC19_03775)	pilA	758850..759848 (-)	999	WP_016390575.1	signal recognition particle-docking protein FtsY	Machinery gene
CPC19_RS03780 (CPC19_03780)	-	759925..761277 (+)	1353	WP_016390576.1	pitrilysin family protein	-
CPC19_RS03785 (CPC19_03785)	-	761267..762586 (+)	1320	WP_016390577.1	pitrilysin family protein	-
CPC19_RS03790 (CPC19_03790)	rsmD	762586..763167 (+)	582	WP_015006608.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
CPC19_RS03795 (CPC19_03795)	coaD	763160..763639 (+)	480	WP_016390578.1	pantetheine-phosphate adenylyltransferase	-
CPC19_RS03800 (CPC19_03800)	-	763644..763901 (+)	258	WP_015006606.1	YfhL family 4Fe-4S dicluster ferredoxin	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 36059.18 Da
• Isoelectric Point: 5.4794

>NTDB_id=248986 CPC19_RS03775 WP_016390575.1 758850..759848(-) (pilA) [Cycloclasticus sp. PY97N]
MFGFGKKKDTDTTKQPPVEEPKEGFFGRLKNQLTKTRSGLTGGLGNLFLGKKQIDDDLFEELEMLLLTADVGIEATQHII
SNLTQRVARKQLADPQALTQALQEEMLSILEPNQQALTIPDSDGPFVILVVGVNGMGKTTTIGKLAKRLQAEGKSVMLAA
GDTFRAAAIEQLQEWGKRNDVEVVAQHTGADSASVIYDAFEKAKARNIDVLLADTAGRLHTQTNLMNELSKINRVIKKLD
DSAPHETMLVLDAGTGQNALAQAKNFDKATPLTSITLTKLDGTAKGGIIFAIANQFKLPIRFIGIGEGINDLRPFDAAEF
TTALFEKSETDH

Nucleotide

• Length: 999 bp

>NTDB_id=248986 CPC19_RS03775 WP_016390575.1 758850..759848(-) (pilA) [Cycloclasticus sp. PY97N]
ATGTTTGGATTTGGCAAAAAGAAAGATACCGACACAACTAAGCAGCCGCCTGTCGAAGAACCTAAAGAAGGTTTTTTTGG
CCGCTTAAAAAACCAGTTAACAAAAACACGCAGCGGATTGACCGGTGGTTTAGGTAATTTATTTTTAGGGAAAAAACAAA
TCGACGACGATTTGTTTGAAGAATTAGAAATGTTACTGCTAACAGCTGATGTCGGCATTGAAGCCACTCAACACATCATT
TCAAATTTAACTCAGCGAGTTGCGCGCAAGCAGCTAGCCGACCCACAGGCTCTCACCCAAGCACTTCAAGAAGAGATGCT
ATCGATCCTTGAGCCAAACCAACAAGCTTTAACCATTCCTGACAGTGACGGCCCTTTCGTTATCTTAGTGGTCGGCGTTA
ATGGCATGGGTAAAACGACGACCATTGGTAAACTGGCTAAACGTTTACAAGCCGAGGGCAAAAGTGTCATGTTAGCGGCT
GGCGATACATTTAGGGCCGCTGCGATTGAACAATTACAAGAATGGGGGAAGCGTAACGACGTTGAGGTTGTTGCTCAACA
TACTGGGGCTGACTCTGCTTCGGTTATTTACGATGCCTTTGAGAAGGCAAAAGCGCGCAACATTGACGTCTTACTGGCAG
ACACTGCTGGCCGCCTACATACCCAAACAAACCTAATGAATGAGTTAAGCAAAATCAACCGTGTTATTAAAAAACTGGAT
GACAGCGCGCCACACGAAACCATGCTGGTTCTTGATGCAGGCACCGGACAAAATGCCCTCGCCCAAGCTAAGAATTTTGA
TAAAGCCACCCCACTAACTAGCATCACTCTTACGAAATTGGACGGCACCGCAAAAGGTGGTATTATTTTCGCCATTGCCA
ATCAATTCAAACTACCCATTCGTTTTATTGGTATTGGTGAAGGCATCAATGACCTACGTCCTTTTGATGCCGCCGAGTTC
ACCACGGCTCTATTTGAAAAATCTGAAACTGACCATTAG

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (125-325)

• SRP54-type protein, helical bundle domain (SRP54_N) (40-106)

3D structure

• AlphaFold DB: S5TDV1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.896	92.771	0.5