Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   COR42_RS16490 Genome accession   NZ_CP023661
Coordinates   3632760..3633161 (-) Length   133 a.a.
NCBI ID   WP_005913706.1    Uniprot ID   A0AAI7ZH35
Organism   Xanthomonas citri pv. citri strain Xcc29-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3627760..3638161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COR42_RS16475 (COR42_16380) - 3629774..3631810 (-) 2037 WP_003482481.1 methyl-accepting chemotaxis protein -
  COR42_RS16480 (COR42_16385) - 3631850..3632380 (-) 531 WP_015463484.1 chemotaxis protein CheW -
  COR42_RS16485 (COR42_16390) - 3632380..3632742 (-) 363 WP_005913708.1 response regulator -
  COR42_RS16490 (COR42_16395) pilG 3632760..3633161 (-) 402 WP_005913706.1 twitching motility response regulator PilG Regulator
  COR42_RS16495 (COR42_16400) gshB 3633398..3634348 (+) 951 WP_011052038.1 glutathione synthase -
  COR42_RS16500 (COR42_16405) - 3634345..3635220 (+) 876 WP_005913700.1 TonB family protein -
  COR42_RS16505 (COR42_16410) - 3635294..3636211 (-) 918 WP_011052039.1 ADP-ribosylglycohydrolase family protein -
  COR42_RS16510 (COR42_16415) tsaB 3636208..3636927 (-) 720 WP_003482499.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14667.03 Da        Isoelectric Point: 6.9539

>NTDB_id=248951 COR42_RS16490 WP_005913706.1 3632760..3633161(-) (pilG) [Xanthomonas citri pv. citri strain Xcc29-1]
MSENIAAGGELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRTYVHA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=248951 COR42_RS16490 WP_005913706.1 3632760..3633161(-) (pilG) [Xanthomonas citri pv. citri strain Xcc29-1]
ATGAGTGAAAACATTGCTGCGGGTGGGGAACTCGCAGGACTGAAGGTGATGGTCATCGATGACTCGAAAACCATTCGCCG
CACCGCCGAAACGCTGCTGAAGCGGGAAGGTTGTGAAGTAGTGACAGCAACGGATGGTTTCGAGGCACTGGCCAAAATTG
CGGACCAGCAACCTCAGATCATTTTCGTCGACATCATGATGCCGCGCCTGGATGGGTACCAGACGTGCGCGTTGATCAAG
GGCAACCAGCTCTTCAAATCGACGCCGGTGATCATGTTGTCGTCCAAGGACGGCCTGTTCGACAAGGCACGCGGCCGCAT
CGTCGGTTCCGAGCAATATCTGACCAAGCCGTTCACCCGTGAAGAACTACTGAGCGCGATCCGCACGTACGTCCACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

90.977

0.684

Multiple sequence alignment