Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CPU08_RS07085 Genome accession   NZ_CP023655
Coordinates   1379683..1381053 (-) Length   456 a.a.
NCBI ID   WP_141822796.1    Uniprot ID   -
Organism   Pediococcus pentosaceus strain JQI-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1374683..1386053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPU08_RS07065 (CPU08_07045) - 1374979..1375392 (-) 414 WP_023440688.1 Mini-ribonuclease 3 -
  CPU08_RS07070 (CPU08_07050) cysS 1375385..1376797 (-) 1413 WP_060743853.1 cysteine--tRNA ligase -
  CPU08_RS07075 (CPU08_07055) gltX 1376978..1378465 (-) 1488 WP_002833250.1 glutamate--tRNA ligase -
  CPU08_RS07080 (CPU08_07060) - 1378535..1379665 (-) 1131 WP_002833249.1 PIN/TRAM domain-containing protein -
  CPU08_RS07085 (CPU08_07065) radA 1379683..1381053 (-) 1371 WP_141822796.1 DNA repair protein RadA Machinery gene
  CPU08_RS07090 (CPU08_07070) - 1381153..1381686 (-) 534 WP_002833247.1 dUTP diphosphatase -
  CPU08_RS07095 (CPU08_07075) - 1381823..1382152 (+) 330 WP_141822798.1 GNAT family N-acetyltransferase -
  CPU08_RS07100 (CPU08_07080) rpiA 1382156..1382842 (+) 687 WP_002833245.1 ribose-5-phosphate isomerase RpiA -
  CPU08_RS07105 (CPU08_07085) - 1382912..1384258 (+) 1347 WP_023440693.1 aminopeptidase C -
  CPU08_RS07110 (CPU08_07090) - 1384334..1384714 (-) 381 WP_141822800.1 helix-turn-helix domain-containing protein -
  CPU08_RS07115 (CPU08_07095) - 1384778..1385965 (-) 1188 WP_060743858.1 MFS transporter -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50359.86 Da        Isoelectric Point: 7.3750

>NTDB_id=248934 CPU08_RS07085 WP_141822796.1 1379683..1381053(-) (radA) [Pediococcus pentosaceus strain JQI-7]
MAKVKTQFLCSECGYVSPKFLGRCPNCGRWNTLVEERISEPKNERKSRVSFEGKSSKPQLISEVKMHEEPRVKTGMEELN
RVLGGGVVDGSLVLIGGDPGIGKSTLLLQLSGQLAATDRDVLYVSGEESASQIKMRAKRLQVNSERFYLYPETDMSNIRA
VIEELHPQYVIIDSVQTMQEPDIDSAVGSVSQIREITAELMQIAKTNNITIFIVGHVTKGGAIAGPKILEHMVDTVLYFE
GDLHHTYRILRAVKNRFGSTNELGIFEMREEGLREVANPSEIFLEERLQDANGSAIVVSMEGTRPILVEIQALITPTIFG
NAQRTASGLDRNRVSLIMAVLEKRANLTLQNQDAYLKAAGGVKLDEPAIDLAIAMSIVSSFKNQGTRPTDSFVGEIGLTG
EIRRVNRIEQRVAEAQKLGFQRILIPKNNLKGWNPPKGIEVVGVTTITDAIRKAFN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=248934 CPU08_RS07085 WP_141822796.1 1379683..1381053(-) (radA) [Pediococcus pentosaceus strain JQI-7]
TTGGCTAAAGTAAAAACACAGTTTTTGTGTTCAGAATGTGGGTATGTTTCACCTAAATTCTTAGGGCGTTGTCCTAATTG
TGGAAGATGGAACACTCTGGTTGAAGAGCGGATTAGTGAACCTAAAAATGAACGTAAGAGTCGCGTTAGTTTTGAGGGTA
AAAGTAGTAAACCACAATTAATTTCAGAAGTTAAAATGCACGAAGAACCGCGAGTTAAAACAGGGATGGAAGAACTGAAC
CGAGTGCTCGGTGGTGGTGTAGTAGATGGCTCACTAGTTCTAATTGGTGGAGATCCAGGAATTGGAAAGTCGACCCTATT
ATTACAACTATCTGGGCAATTAGCTGCTACTGATCGAGATGTTTTATACGTGTCTGGGGAAGAAAGTGCTTCACAGATCA
AGATGCGCGCCAAACGTTTACAGGTTAACAGTGAACGTTTTTACTTATACCCTGAAACTGATATGTCCAATATTCGTGCG
GTCATTGAGGAACTACATCCTCAGTATGTAATTATTGATTCTGTTCAAACCATGCAAGAGCCCGACATTGATTCAGCAGT
AGGTAGTGTATCGCAAATTCGAGAAATTACAGCTGAATTAATGCAAATTGCTAAAACAAATAACATTACTATTTTTATTG
TTGGTCATGTAACTAAAGGGGGAGCCATTGCTGGTCCTAAAATTTTAGAACATATGGTTGATACAGTACTTTATTTTGAA
GGCGATTTGCATCATACGTATCGAATTTTACGAGCGGTTAAAAATCGATTTGGTTCTACGAATGAATTGGGAATTTTCGA
AATGCGAGAGGAAGGGCTTCGAGAAGTAGCCAATCCTTCGGAAATCTTTTTAGAGGAACGCCTGCAAGATGCTAACGGTT
CCGCTATTGTGGTTTCGATGGAAGGTACTCGACCAATTTTGGTTGAAATTCAAGCTTTGATTACGCCTACCATTTTTGGG
AATGCTCAGCGGACTGCTAGCGGGTTGGATCGTAACCGAGTCTCATTAATTATGGCAGTTTTAGAAAAAAGGGCTAATTT
AACGTTGCAGAACCAAGACGCCTACTTAAAGGCTGCTGGCGGAGTGAAATTGGATGAGCCAGCAATTGATTTGGCAATTG
CGATGAGTATCGTATCGAGTTTTAAGAATCAAGGGACGAGACCGACTGATAGCTTTGTTGGCGAAATTGGTTTAACTGGT
GAAATCCGACGGGTTAATCGAATTGAACAACGGGTTGCCGAAGCTCAAAAACTAGGTTTTCAACGAATTTTAATTCCTAA
AAATAATTTGAAGGGTTGGAATCCACCTAAAGGGATTGAAGTAGTAGGAGTAACAACGATTACGGACGCAATTCGGAAGG
CGTTTAATTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-221)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

66.593

99.781

0.664
  radA Streptococcus mitis NCTC 12261

66.593

99.781

0.664
  radA Streptococcus mitis SK321

66.593

99.781

0.664
  radA Streptococcus pneumoniae TIGR4

66.593

99.781

0.664
  radA Streptococcus pneumoniae D39

66.593

99.781

0.664
  radA Streptococcus pneumoniae R6

66.593

99.781

0.664
  radA Bacillus subtilis subsp. subtilis str. 168

65.132

100

0.651

Multiple sequence alignment