Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AT852_RS15735 Genome accession   NZ_CP023645
Coordinates   2788487..2789116 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella sonnei strain CFSAN030807     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2783487..2794116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT852_RS15720 (AT852_15720) helD 2783729..2785783 (-) 2055 WP_000420537.1 DNA helicase IV -
  AT852_RS15725 (AT852_15725) - 2785906..2786352 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AT852_RS15730 (AT852_15730) yccS 2786362..2788524 (+) 2163 WP_000875023.1 YccS family putative transporter -
  AT852_RS15735 (AT852_15735) sxy/tfoX 2788487..2789116 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AT852_RS15740 (AT852_15740) sulA 2789335..2789844 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AT852_RS15750 (AT852_15750) ompA 2790199..2791239 (+) 1041 WP_000750416.1 porin OmpA -
  AT852_RS15755 (AT852_15755) matP 2791315..2791767 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AT852_RS15760 (AT852_15760) - 2791953..2793713 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=248883 AT852_RS15735 WP_000839153.1 2788487..2789116(-) (sxy/tfoX) [Shigella sonnei strain CFSAN030807]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=248883 AT852_RS15735 WP_000839153.1 2788487..2789116(-) (sxy/tfoX) [Shigella sonnei strain CFSAN030807]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment