Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CPF12_RS09250 Genome accession   NZ_CP023643
Coordinates   1943831..1945513 (+) Length   560 a.a.
NCBI ID   WP_069126314.1    Uniprot ID   A0A1D2LNW0
Organism   Brochothrix thermosphacta strain BII     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1938831..1950513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPF12_RS09225 (CPF12_09225) xseB 1939337..1939573 (+) 237 WP_029091145.1 exodeoxyribonuclease VII small subunit -
  CPF12_RS09230 (CPF12_09230) - 1939570..1940451 (+) 882 WP_029091146.1 polyprenyl synthetase family protein -
  CPF12_RS09235 (CPF12_09235) dxs 1940477..1942264 (+) 1788 WP_069126315.1 1-deoxy-D-xylulose-5-phosphate synthase -
  CPF12_RS09240 (CPF12_09240) - 1942278..1943102 (+) 825 WP_069118891.1 TlyA family RNA methyltransferase -
  CPF12_RS09245 (CPF12_09245) ahrC 1943351..1943800 (+) 450 WP_029091149.1 transcriptional regulator AhrC/ArgR -
  CPF12_RS09250 (CPF12_09250) recN 1943831..1945513 (+) 1683 WP_069126314.1 DNA repair protein RecN Machinery gene
  CPF12_RS09255 (CPF12_09255) buk 1945658..1946758 (+) 1101 WP_029091151.1 butyrate kinase -
  CPF12_RS12975 - 1946833..1946913 (-) 81 WP_227002028.1 hypothetical protein -
  CPF12_RS09260 (CPF12_09260) gndA 1947187..1948602 (+) 1416 WP_069118888.1 NADP-dependent phosphogluconate dehydrogenase -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63373.88 Da        Isoelectric Point: 5.0123

>NTDB_id=248865 CPF12_RS09250 WP_069126314.1 1943831..1945513(+) (recN) [Brochothrix thermosphacta strain BII]
MLQELSIRHLAIIEEISLSFKKGLTVLTGETGAGKSIIIDALGLIVGGRASNDLIRHGADKADLEALFTIEKNKRAHSVL
EELGIEVEDEMVVLHRTLMRSGKNVCRINGKLVTTTNLRDVGETLLDIHSQHESQDLMNDAHHIYLIDQFAAEKIAEPLK
VYQLLYAELKNKRQEFNRFNKNEQELAQRIDMLHFQNKELEAANLVLGEEEELAAERSLLANYEKINHNVEASYDLLQGE
QSTLDQVAKVMNHLTAIQEVDGRYKEWFETVQTAYFSLSDVASDLNQELSTLEYNPEQLNNIETRMDIINQLKRKYGDSV
AEMMAYHEKISQEIEHLEHSESHSEQLQKEIEIVNEKLQLLANDLTVIRQQAAEELTVSIHDEFKELYMDKAIFKVNFET
QELGERGNNRIQFYTSTNPGEPLKPLHKIASGGELSRMMLAMKTIFSKHQGITSIIFDEVDTGVSGRVAQAIGQKIYSVS
VGSQVLCISHLPQVAAMADNHYHIEKTVSASRTRTTVSELSLDKRVAEIAMMMSGVEMTTSTEMHARELIQQSEKMKNIG

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=248865 CPF12_RS09250 WP_069126314.1 1943831..1945513(+) (recN) [Brochothrix thermosphacta strain BII]
ATGCTCCAAGAATTATCGATACGTCATCTTGCAATCATCGAGGAAATTTCATTATCTTTTAAAAAGGGTCTTACAGTTTT
GACTGGTGAAACAGGTGCCGGAAAATCAATTATTATTGATGCATTGGGACTTATTGTTGGTGGTCGAGCATCGAACGATT
TAATCCGACATGGTGCAGATAAGGCCGATTTAGAAGCATTGTTTACTATTGAAAAAAATAAGCGTGCCCATTCTGTTCTA
GAAGAATTAGGGATTGAAGTCGAGGATGAGATGGTCGTTTTACATCGAACATTGATGAGAAGTGGTAAAAATGTCTGTCG
AATCAATGGGAAATTAGTGACAACAACTAATTTGCGTGATGTAGGCGAGACGTTATTAGATATTCATTCCCAACATGAGA
GTCAAGATTTAATGAATGATGCTCATCATATCTATTTAATAGATCAGTTTGCAGCAGAAAAAATAGCTGAACCTTTAAAA
GTATACCAATTACTCTATGCCGAGTTGAAAAATAAACGTCAAGAATTTAATCGTTTTAATAAAAACGAACAAGAATTAGC
ACAACGAATTGATATGTTACACTTTCAAAATAAAGAATTAGAAGCAGCTAATCTCGTATTAGGTGAAGAAGAAGAGTTGG
CAGCAGAACGTTCGTTATTGGCAAATTATGAAAAAATAAATCATAATGTTGAAGCAAGTTATGACTTATTACAAGGTGAG
CAGTCAACGTTAGATCAAGTAGCAAAAGTGATGAATCATTTAACTGCAATTCAAGAAGTTGATGGACGTTACAAAGAATG
GTTTGAAACAGTGCAAACTGCTTATTTCAGCTTATCCGATGTTGCGAGCGATTTAAATCAAGAACTGTCAACATTGGAAT
ATAATCCTGAGCAATTAAATAATATAGAAACACGGATGGATATCATCAACCAATTAAAACGTAAATATGGTGATTCAGTT
GCTGAAATGATGGCTTACCATGAAAAAATAAGCCAAGAAATTGAACACTTAGAACATAGTGAGTCACACTCAGAACAATT
GCAAAAAGAAATCGAAATCGTGAATGAGAAGTTACAACTCCTAGCGAATGATTTAACCGTTATACGCCAGCAGGCAGCTG
AAGAGTTAACTGTATCAATTCATGATGAATTTAAAGAACTTTACATGGATAAAGCAATTTTTAAAGTGAATTTTGAAACA
CAAGAGTTAGGTGAGCGCGGTAATAATCGTATTCAATTCTATACATCTACTAACCCTGGTGAACCTTTGAAACCTTTGCA
TAAAATTGCATCAGGTGGGGAATTGTCACGGATGATGTTAGCAATGAAAACCATCTTTTCTAAGCATCAAGGTATTACAA
GCATCATTTTTGATGAAGTTGATACCGGTGTTAGCGGTCGAGTGGCACAAGCGATTGGTCAAAAGATATACTCTGTGTCA
GTAGGATCACAAGTGTTGTGTATTTCACATTTACCACAGGTTGCAGCAATGGCAGACAACCATTATCATATTGAAAAAAC
TGTCTCTGCATCACGTACACGTACGACGGTTTCTGAACTGTCGTTGGATAAACGTGTTGCTGAAATAGCGATGATGATGA
GTGGTGTTGAAATGACAACTTCAACTGAGATGCATGCACGTGAACTGATCCAACAATCAGAAAAAATGAAGAATATTGGC
TAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D2LNW0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.569

100

0.489

Multiple sequence alignment