Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CO730_RS22310 Genome accession   NZ_CP023642
Coordinates   5180774..5182135 (+) Length   453 a.a.
NCBI ID   WP_119793402.1    Uniprot ID   -
Organism   Flavobacterium anhuiense strain M168     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5175774..5187135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO730_RS22290 - 5177287..5178093 (-) 807 WP_008465476.1 glycogen/starch synthase -
  CO730_RS22295 panC 5178171..5179049 (+) 879 WP_066033296.1 pantoate--beta-alanine ligase -
  CO730_RS22300 panD 5179064..5179414 (+) 351 WP_008465481.1 aspartate 1-decarboxylase -
  CO730_RS22305 - 5179620..5180774 (+) 1155 WP_091129805.1 alpha/beta hydrolase -
  CO730_RS22310 radA 5180774..5182135 (+) 1362 WP_119793402.1 DNA repair protein RadA Machinery gene
  CO730_RS22315 - 5182155..5184119 (+) 1965 WP_119793954.1 transglycosylase domain-containing protein -
  CO730_RS22320 - 5184279..5185316 (-) 1038 WP_119793404.1 aldo/keto reductase -
  CO730_RS22325 - 5185368..5185571 (-) 204 WP_119793406.1 hypothetical protein -
  CO730_RS23325 - 5185709..5185861 (-) 153 WP_162927267.1 hypothetical protein -
  CO730_RS22330 - 5185854..5186108 (-) 255 WP_157498583.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49783.17 Da        Isoelectric Point: 5.8284

>NTDB_id=248838 CO730_RS22310 WP_119793402.1 5180774..5182135(+) (radA) [Flavobacterium anhuiense strain M168]
MSKVKTSFFCQNCGTQYAKWQGQCNACKEWNTIAEEIIQKQDKVAWKSEPTPTSKAPKPLKINEIDSTQEVRMDTTDSEL
NRVLGGGLVPGSLTLLGGEPGIGKSTLLLQVSLKLPYKTLYVSGEESQKQIKMRAERITPNSENCYILTETKTQNIFKQI
ETIEPEVVIIDSIQTLHTDYIESTAGSISQIRETTAELIKFAKESNIPVILIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHIYRILRSLKNRFGSTSELGIYEMLGSGLREVSNPSEILISHKDEELSGTAIATTLEGMRPLMIEIQSLVSTAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGAKDVFLNVTGGISVDDPAIDLAVVAAILSSNEDIPVGKGFCFAGEVGLSGEI
RPVNRVDQRIQEAEKLGFDTIFVSKYNKIALKNTGIKIELVAKIEDVASILFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=248838 CO730_RS22310 WP_119793402.1 5180774..5182135(+) (radA) [Flavobacterium anhuiense strain M168]
ATGTCAAAAGTTAAAACTTCCTTTTTCTGCCAAAACTGCGGAACCCAATATGCCAAATGGCAAGGGCAATGCAACGCGTG
CAAAGAATGGAATACGATTGCCGAAGAAATTATCCAGAAACAGGATAAAGTGGCTTGGAAAAGCGAACCCACTCCAACAA
GCAAAGCACCAAAGCCTTTAAAAATTAACGAAATTGATTCCACACAGGAAGTTCGAATGGATACGACCGACAGCGAATTA
AATCGTGTATTGGGTGGCGGACTTGTCCCTGGATCTTTGACGCTTTTGGGCGGTGAACCCGGCATCGGAAAAAGTACACT
TTTACTTCAAGTTTCGTTAAAATTACCTTATAAGACATTGTACGTTTCTGGAGAAGAAAGCCAGAAACAGATCAAAATGC
GTGCGGAAAGAATTACCCCAAATAGCGAAAACTGTTATATTCTAACGGAAACCAAAACGCAAAACATCTTCAAACAGATT
GAAACCATTGAGCCTGAAGTAGTCATTATCGACTCGATTCAGACCTTACATACCGATTATATCGAATCTACAGCGGGAAG
CATTTCCCAGATTCGCGAAACCACGGCAGAATTGATCAAATTTGCTAAAGAAAGCAACATTCCGGTGATTTTGATTGGCC
ATATTACCAAAGACGGAAACATCGCTGGGCCAAAAATTTTGGAACACATGGTTGACACCGTTTTGCAGTTTGAAGGCGAT
CGAAACCATATTTACCGAATTTTACGTTCTCTTAAAAACCGTTTTGGTTCAACTTCCGAACTTGGTATTTATGAAATGCT
AGGAAGCGGTTTACGCGAAGTAAGCAATCCTTCCGAAATTCTAATTTCTCATAAAGACGAAGAACTTTCGGGAACTGCAA
TTGCAACAACTCTAGAAGGCATGCGACCTTTGATGATTGAAATACAATCTTTGGTTAGCACCGCAGTTTACGGAACTCCT
CAGCGAAGCACAACAGGCTATAACGCAAAAAGACTAAACATGATTCTCGCTGTTTTAGAAAAAAGAGCTGGATTCCGTTT
AGGCGCAAAAGATGTTTTTCTGAATGTTACAGGAGGAATTTCTGTTGATGATCCTGCAATTGACTTGGCCGTTGTTGCCG
CAATTTTATCTTCTAACGAAGACATTCCGGTTGGAAAAGGTTTCTGTTTTGCTGGCGAAGTTGGTTTATCAGGTGAAATC
CGTCCTGTAAATCGTGTGGATCAGCGCATTCAGGAAGCTGAAAAATTAGGTTTCGATACTATCTTTGTTTCTAAATATAA
TAAAATAGCTTTAAAGAATACGGGAATTAAAATTGAACTTGTTGCAAAAATTGAAGATGTTGCCAGCATTCTTTTTGGCT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-219)

Subunit ChlI of Mg-chelatase (ChlI)

(316-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.93

100

0.486
  radA Streptococcus pneumoniae Rx1

50.585

94.26

0.477
  radA Streptococcus pneumoniae D39

50.585

94.26

0.477
  radA Streptococcus pneumoniae R6

50.585

94.26

0.477
  radA Streptococcus pneumoniae TIGR4

50.585

94.26

0.477
  radA Streptococcus mitis SK321

50.585

94.26

0.477
  radA Streptococcus mitis NCTC 12261

50.585

94.26

0.477

Multiple sequence alignment