Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   CHY_RS06720 Genome accession   NC_007503
Coordinates   1288961..1289872 (-) Length   303 a.a.
NCBI ID   WP_011344349.1    Uniprot ID   Q3AC60
Organism   Carboxydothermus hydrogenoformans Z-2901     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1283961..1294872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHY_RS06700 (CHY_1438) - 1284920..1286221 (-) 1302 WP_011344345.1 amidohydrolase -
  CHY_RS06705 (CHY_1439) - 1286228..1286860 (-) 633 WP_011344346.1 class II aldolase/adducin family protein -
  CHY_RS06710 (CHY_1440) - 1286876..1288111 (-) 1236 WP_011344347.1 adenosylhomocysteinase -
  CHY_RS06715 (CHY_1441) mtnP 1288137..1288934 (-) 798 WP_011344348.1 S-methyl-5'-thioadenosine phosphorylase -
  CHY_RS06720 (CHY_1442) pilA 1288961..1289872 (-) 912 WP_011344349.1 signal recognition particle-docking protein FtsY Machinery gene
  CHY_RS06725 (CHY_1443) smc 1289906..1293463 (-) 3558 WP_011344350.1 chromosome segregation protein SMC -
  CHY_RS06730 (CHY_1444) rnc 1293465..1294172 (-) 708 WP_011344351.1 ribonuclease III -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 33485.06 Da        Isoelectric Point: 7.9560

>NTDB_id=24877 CHY_RS06720 WP_011344349.1 1288961..1289872(-) (pilA) [Carboxydothermus hydrogenoformans Z-2901]
MGFFDRLKESLIKTKQNIVAKIEDVFKKSTVDEELFEKLEEILIEGDVGVKPSLELVEKLRKTARERRITDSEQLKQVLK
EEILKILEAGDNKLKNVPRTPLVILVVGVNGVGKTTTIGKLAYYFKQQGKQVLLAAGDTFRAAAIEQLEIWGNKVGCPVI
KQKEGSDPAAVAFDAVKAAIARKIDVLIIDTAGRLHTKTNLMEELRKVKRVIERELPGAPDEVLLVLDATTGQNALSQVE
YFNKALDLTGLVLTKLDGTAKGGVIIGIKSSYQIPIKFIGVGEKMDDLRPFDPQEFVEALFSS

Nucleotide


Download         Length: 912 bp        

>NTDB_id=24877 CHY_RS06720 WP_011344349.1 1288961..1289872(-) (pilA) [Carboxydothermus hydrogenoformans Z-2901]
TTGGGATTTTTTGACCGTTTAAAAGAGAGTTTAATAAAAACCAAGCAAAACATCGTAGCTAAAATTGAGGATGTCTTCAA
AAAGTCGACGGTCGATGAGGAGCTTTTTGAAAAACTGGAAGAAATATTGATTGAAGGTGACGTGGGTGTTAAACCAAGTC
TTGAGCTGGTGGAAAAGCTAAGAAAAACGGCAAGAGAACGACGGATTACCGATAGTGAGCAATTAAAGCAGGTGTTAAAA
GAAGAAATCTTAAAAATTTTAGAAGCGGGAGACAATAAACTGAAGAATGTCCCAAGAACGCCCCTGGTAATATTGGTAGT
AGGGGTAAATGGTGTAGGTAAAACTACCACTATCGGGAAATTAGCTTACTACTTCAAGCAACAAGGAAAGCAGGTATTGT
TAGCAGCTGGCGATACTTTTAGGGCTGCTGCCATAGAGCAATTGGAAATCTGGGGTAATAAAGTAGGATGTCCGGTGATA
AAACAAAAAGAAGGTTCGGACCCGGCAGCGGTGGCTTTTGATGCAGTTAAGGCGGCCATTGCCCGAAAAATAGATGTATT
AATTATTGATACCGCTGGTAGGCTTCATACAAAAACAAACTTAATGGAAGAACTAAGAAAAGTAAAAAGAGTAATAGAAA
GGGAGTTACCGGGGGCTCCTGATGAAGTTTTATTAGTTTTGGATGCCACTACCGGACAGAATGCTTTAAGTCAAGTGGAG
TATTTTAATAAAGCCCTGGATTTGACCGGGTTGGTTTTAACAAAACTGGATGGAACAGCTAAAGGCGGTGTAATTATAGG
GATTAAAAGTAGTTATCAAATTCCAATAAAATTTATTGGGGTTGGGGAAAAAATGGATGATTTAAGACCCTTTGACCCCC
AAGAATTTGTTGAAGCGTTATTTTCATCTTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(20-83)

SRP54-type protein, GTPase domain (SRP54)

(102-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3AC60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.505

100

0.495

Multiple sequence alignment