Detailed information NTG0248752

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: DBZ62_RS06985
• Genome accession: NZ_CP028849
• Coordinates: 1461052..1462056 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain IMP68
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1456052..1467056

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DBZ62_RS06955 (DBZ62_06935)	fghA	1456144..1456995 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
DBZ62_RS06960 (DBZ62_06940)	ispF	1457066..1457539 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
DBZ62_RS06965 (DBZ62_06945)	truD	1457536..1458603 (+)	1068	WP_023115122.1	tRNA pseudouridine(13) synthase TruD	-
DBZ62_RS06970 (DBZ62_06950)	surE	1458591..1459340 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
DBZ62_RS06975 (DBZ62_06955)	-	1459373..1460008 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
DBZ62_RS06980 (DBZ62_06960)	-	1460054..1460947 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
DBZ62_RS06985 (DBZ62_06965)	rpoS	1461052..1462056 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
DBZ62_RS06990 (DBZ62_06970)	fdxA	1462483..1462806 (-)	324	WP_003092272.1	ferredoxin FdxA	-
DBZ62_RS06995 (DBZ62_06975)	mutS	1462873..1465440 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
DBZ62_RS07005 (DBZ62_06985)	-	1465566..1466573 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=248752 DBZ62_RS06985 WP_003113871.1 1461052..1462056(+) (rpoS) [Pseudomonas aeruginosa strain IMP68]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=248752 DBZ62_RS06985 WP_003113871.1 1461052..1462056(+) (rpoS) [Pseudomonas aeruginosa strain IMP68]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653