Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   DBX32_RS28000 Genome accession   NZ_CP028848
Coordinates   5882268..5882864 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain IMP67     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5877268..5887864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBX32_RS27975 (DBX32_27900) - 5877371..5878717 (+) 1347 WP_079263478.1 ISNCY family transposase -
  DBX32_RS27980 (DBX32_27905) - 5878728..5879081 (-) 354 WP_079263477.1 SH3 domain-containing protein -
  DBX32_RS27985 (DBX32_27910) pilQ 5879205..5881073 (-) 1869 Protein_5412 type 4a pilus secretin PilQ -
  DBX32_RS27990 (DBX32_27915) comL/pilP 5881127..5881651 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  DBX32_RS27995 (DBX32_27920) pilO 5881648..5882271 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  DBX32_RS28000 (DBX32_27925) pilN 5882268..5882864 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  DBX32_RS28005 (DBX32_27930) pilM 5882864..5883928 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  DBX32_RS28010 (DBX32_27935) - 5884113..5886584 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=248713 DBX32_RS28000 WP_003095839.1 5882268..5882864(-) (pilN) [Pseudomonas aeruginosa strain IMP67]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=248713 DBX32_RS28000 WP_003095839.1 5882268..5882864(-) (pilN) [Pseudomonas aeruginosa strain IMP67]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369