Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   DB248_RS01175 Genome accession   NZ_CP028841
Coordinates   200307..200756 (+) Length   149 a.a.
NCBI ID   WP_002986120.1    Uniprot ID   A0A0H2UT44
Organism   Streptococcus pyogenes strain CCUG 4207     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 195307..205756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DB248_RS01150 (DB248_01150) - 195833..196966 (+) 1134 WP_011285737.1 ISAs1-like element IS1548 family transposase -
  DB248_RS01160 (DB248_01160) - 197291..197962 (+) 672 WP_002991199.1 rhomboid family intramembrane serine protease -
  DB248_RS01165 (DB248_01165) galU 198061..198960 (-) 900 WP_002986125.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  DB248_RS01170 (DB248_01170) - 198993..200009 (-) 1017 WP_002986123.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  DB248_RS01175 (DB248_01175) rcrR 200307..200756 (+) 450 WP_002986120.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  DB248_RS01180 (DB248_01180) - 200749..202455 (+) 1707 WP_010921864.1 ABC transporter ATP-binding protein -
  DB248_RS01185 (DB248_01185) - 202458..204242 (+) 1785 WP_010921865.1 ABC transporter ATP-binding protein -
  DB248_RS01190 (DB248_01190) - 204360..205127 (+) 768 WP_002986113.1 epoxyqueuosine reductase QueH -
  DB248_RS01195 (DB248_01195) - 205237..205683 (+) 447 WP_002986111.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17343.25 Da        Isoelectric Point: 9.5568

>NTDB_id=248548 DB248_RS01175 WP_002986120.1 200307..200756(+) (rcrR) [Streptococcus pyogenes strain CCUG 4207]
MSQVIGDLRELIHQIEQISDEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQLRISKSVASHLVKRMVKNGFIN
VMPSQVDKRYKQVVLAQVGRDKLPLLRECRKDIEHYFLKEITKEELLTAKKVIEQLKQNMLTYKGDNDA

Nucleotide


Download         Length: 450 bp        

>NTDB_id=248548 DB248_RS01175 WP_002986120.1 200307..200756(+) (rcrR) [Streptococcus pyogenes strain CCUG 4207]
ATGTCACAAGTGATAGGTGATTTACGTGAATTGATACATCAAATCGAACAAATTAGTGATGAGATTGCAAAAAAATATGA
TGTAGAGCATCTAGCAGGTCCTCAAGGTTATGTTCTTGTTTTTTTAGCTAAACACCAAAATCAAGAAATATTTGTCAAAG
ATATTGAAAAACAACTTCGTATCTCAAAGTCAGTTGCTAGTCATTTAGTGAAACGTATGGTCAAAAATGGGTTTATCAAT
GTGATGCCTTCCCAAGTGGATAAGCGTTATAAGCAAGTAGTGTTAGCGCAGGTTGGTAGAGATAAATTGCCTTTGTTGCG
GGAGTGTCGTAAGGATATCGAGCACTATTTTTTAAAAGAAATTACAAAAGAAGAGTTGCTGACAGCGAAAAAAGTAATTG
AACAGCTCAAGCAAAATATGCTAACTTATAAAGGAGACAACGATGCTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2UT44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

47.143

93.96

0.443